Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2048

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2047 and Shewana3_2048 are separated by 250 nucleotidesShewana3_2048 and Shewana3_2049 are separated by 180 nucleotides Shewana3_2047: Shewana3_2047 - thioredoxin reductase (RefSeq), at 2,454,590 to 2,455,543 _2047 Shewana3_2048: Shewana3_2048 - L-alanine dehydrogenase (RefSeq), at 2,455,794 to 2,456,909 _2048 Shewana3_2049: Shewana3_2049 - leucine-responsive transcriptional regulator (RefSeq), at 2,457,090 to 2,457,596 _2049 Position (kb) 2455 2456 2457Strain fitness (log2 ratio) -3 -2 -1 0 1at 2455.093 kb on - strand, within Shewana3_2047at 2455.175 kb on + strandat 2455.175 kb on + strand, within Shewana3_2047at 2455.183 kb on - strand, within Shewana3_2047at 2455.183 kb on - strand, within Shewana3_2047at 2455.219 kb on + strand, within Shewana3_2047at 2455.457 kb on - strandat 2455.492 kb on - strandat 2455.584 kb on + strandat 2455.673 kb on - strandat 2456.135 kb on - strand, within Shewana3_2048at 2456.364 kb on + strand, within Shewana3_2048at 2456.672 kb on - strand, within Shewana3_2048at 2456.692 kb on - strand, within Shewana3_2048at 2456.993 kb on + strandat 2457.004 kb on - strandat 2457.004 kb on - strandat 2457.191 kb on + strand, within Shewana3_2049at 2457.191 kb on + strand, within Shewana3_2049at 2457.199 kb on - strand, within Shewana3_2049at 2457.219 kb on - strand, within Shewana3_2049at 2457.365 kb on + strand, within Shewana3_2049at 2457.378 kb on + strand, within Shewana3_2049

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
2,455,093 - Shewana3_2047 0.53 -1.6
2,455,175 + +0.2
2,455,175 + Shewana3_2047 0.61 -1.8
2,455,183 - Shewana3_2047 0.62 -1.8
2,455,183 - Shewana3_2047 0.62 -0.6
2,455,219 + Shewana3_2047 0.66 -2.9
2,455,457 - -2.7
2,455,492 - -0.8
2,455,584 + -0.8
2,455,673 - -0.1
2,456,135 - Shewana3_2048 0.31 +0.1
2,456,364 + Shewana3_2048 0.51 -0.5
2,456,672 - Shewana3_2048 0.79 -0.6
2,456,692 - Shewana3_2048 0.80 +0.8
2,456,993 + -0.3
2,457,004 - -0.7
2,457,004 - -1.3
2,457,191 + Shewana3_2049 0.20 -1.4
2,457,191 + Shewana3_2049 0.20 -0.9
2,457,199 - Shewana3_2049 0.21 -2.5
2,457,219 - Shewana3_2049 0.25 -2.2
2,457,365 + Shewana3_2049 0.54 -1.5
2,457,378 + Shewana3_2049 0.57 -1.4

Or see this region's nucleotide sequence