Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1770

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1769 and yebU are separated by 297 nucleotidesyebU and Shewana3_1771 are separated by 62 nucleotides Shewana3_1769: Shewana3_1769 - TatD family hydrolase (RefSeq), at 2,082,538 to 2,083,338 _1769 Shewana3_1770: yebU - rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq), at 2,083,636 to 2,085,168 yebU Shewana3_1771: Shewana3_1771 - nucleoside recognition domain-containing protein (RefSeq), at 2,085,231 to 2,086,457 _1771 Position (kb) 2083 2084 2085 2086Strain fitness (log2 ratio) -2 -1 0 1at 2082.767 kb on + strand, within Shewana3_1769at 2083.180 kb on + strand, within Shewana3_1769at 2083.276 kb on + strandat 2083.926 kb on + strand, within yebUat 2084.377 kb on - strand, within yebUat 2084.909 kb on - strand, within yebUat 2084.993 kb on + strand, within yebUat 2085.089 kb on + strandat 2085.089 kb on + strandat 2085.097 kb on - strandat 2085.223 kb on + strandat 2085.293 kb on + strandat 2085.320 kb on - strandat 2085.557 kb on + strand, within Shewana3_1771at 2085.607 kb on + strand, within Shewana3_1771at 2085.607 kb on + strand, within Shewana3_1771at 2085.607 kb on + strand, within Shewana3_1771at 2085.698 kb on + strand, within Shewana3_1771at 2085.804 kb on + strand, within Shewana3_1771at 2086.095 kb on + strand, within Shewana3_1771

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,082,767 + Shewana3_1769 0.29 -0.2
2,083,180 + Shewana3_1769 0.80 -0.3
2,083,276 + +0.1
2,083,926 + yebU Shewana3_1770 0.19 -0.2
2,084,377 - yebU Shewana3_1770 0.48 -0.6
2,084,909 - yebU Shewana3_1770 0.83 +1.2
2,084,993 + yebU Shewana3_1770 0.89 -1.8
2,085,089 + -0.1
2,085,089 + -0.2
2,085,097 - +0.8
2,085,223 + +1.2
2,085,293 + -1.8
2,085,320 - -1.8
2,085,557 + Shewana3_1771 0.27 +0.8
2,085,607 + Shewana3_1771 0.31 +0.1
2,085,607 + Shewana3_1771 0.31 +0.2
2,085,607 + Shewana3_1771 0.31 +0.8
2,085,698 + Shewana3_1771 0.38 +0.3
2,085,804 + Shewana3_1771 0.47 +0.3
2,086,095 + Shewana3_1771 0.70 +0.0

Or see this region's nucleotide sequence