Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1723

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1721 and Shewana3_1722 are separated by 116 nucleotidesShewana3_1722 and Shewana3_1723 are separated by 15 nucleotidesShewana3_1723 and Shewana3_1724 overlap by 10 nucleotidesShewana3_1724 and Shewana3_1725 are separated by 164 nucleotides Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257 _1721 Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069 _1722 Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434 _1723 Shewana3_1724: Shewana3_1724 - two component transcriptional regulator (RefSeq), at 2,027,425 to 2,028,108 _1724 Shewana3_1725: Shewana3_1725 - hypothetical protein (RefSeq), at 2,028,273 to 2,028,620 _1725 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -3 -2 -1 0 1at 2025.560 kb on + strand, within Shewana3_1722at 2025.614 kb on + strand, within Shewana3_1722at 2025.873 kb on + strand, within Shewana3_1722at 2026.333 kb on - strand, within Shewana3_1723at 2026.338 kb on - strand, within Shewana3_1723at 2026.538 kb on + strand, within Shewana3_1723at 2026.875 kb on + strand, within Shewana3_1723at 2027.063 kb on + strand, within Shewana3_1723at 2027.472 kb on + strandat 2027.480 kb on - strandat 2027.480 kb on - strandat 2027.531 kb on - strand, within Shewana3_1724at 2027.724 kb on - strand, within Shewana3_1724at 2028.118 kb on - strandat 2028.212 kb on - strandat 2028.421 kb on - strand, within Shewana3_1725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,025,560 + Shewana3_1722 0.27 -0.4
2,025,614 + Shewana3_1722 0.34 -0.6
2,025,873 + Shewana3_1722 0.72 +0.5
2,026,333 - Shewana3_1723 0.18 -3.0
2,026,338 - Shewana3_1723 0.19 -3.4
2,026,538 + Shewana3_1723 0.34 -0.1
2,026,875 + Shewana3_1723 0.59 -3.6
2,027,063 + Shewana3_1723 0.72 -2.1
2,027,472 + -2.3
2,027,480 - -1.8
2,027,480 - -3.5
2,027,531 - Shewana3_1724 0.15 -3.5
2,027,724 - Shewana3_1724 0.44 -3.0
2,028,118 - +1.2
2,028,212 - +0.2
2,028,421 - Shewana3_1725 0.43 -1.6

Or see this region's nucleotide sequence