Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1575

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1573 and Shewana3_1574 are separated by 712 nucleotidesShewana3_1574 and Shewana3_1575 are separated by 11 nucleotidesShewana3_1575 and Shewana3_1576 are separated by 162 nucleotides Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666 _1573 Shewana3_1574: Shewana3_1574 - hypothetical protein (RefSeq), at 1,842,379 to 1,842,645 _1574 Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393 _1575 Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418 _1576 Position (kb) 1842 1843 1844 1845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1842.196 kb on - strandat 1842.329 kb on - strandat 1842.363 kb on + strandat 1842.402 kb on + strandat 1842.639 kb on + strandat 1842.677 kb on - strandat 1842.752 kb on + strandat 1842.780 kb on - strandat 1842.807 kb on + strandat 1842.865 kb on + strand, within Shewana3_1575at 1842.913 kb on + strand, within Shewana3_1575at 1842.923 kb on + strand, within Shewana3_1575at 1842.923 kb on + strand, within Shewana3_1575at 1843.037 kb on - strand, within Shewana3_1575at 1843.071 kb on - strand, within Shewana3_1575at 1843.194 kb on + strand, within Shewana3_1575at 1843.194 kb on + strand, within Shewana3_1575at 1843.589 kb on + strand, within Shewana3_1575at 1843.820 kb on + strand, within Shewana3_1575at 1843.964 kb on - strand, within Shewana3_1575at 1844.009 kb on + strand, within Shewana3_1575at 1844.271 kb on + strandat 1844.410 kb on - strandat 1845.006 kb on - strand, within Shewana3_1576at 1845.016 kb on - strand, within Shewana3_1576at 1845.379 kb on + strand, within Shewana3_1576

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,841,682 + -1.3
1,841,682 + -1.3
1,841,682 + -1.6
1,841,690 - +0.2
1,841,690 - -1.6
1,841,690 - +0.5
1,841,690 - -0.1
1,842,196 - -0.2
1,842,329 - -2.1
1,842,363 + -1.5
1,842,402 + -0.2
1,842,639 + -1.5
1,842,677 - -3.8
1,842,752 + -3.2
1,842,780 - -1.2
1,842,807 + -1.8
1,842,865 + Shewana3_1575 0.12 -0.2
1,842,913 + Shewana3_1575 0.15 -1.2
1,842,923 + Shewana3_1575 0.15 -1.9
1,842,923 + Shewana3_1575 0.15 -4.0
1,843,037 - Shewana3_1575 0.22 -1.3
1,843,071 - Shewana3_1575 0.24 -1.2
1,843,194 + Shewana3_1575 0.31 -1.8
1,843,194 + Shewana3_1575 0.31 -1.3
1,843,589 + Shewana3_1575 0.54 -1.2
1,843,820 + Shewana3_1575 0.67 -2.0
1,843,964 - Shewana3_1575 0.75 -0.5
1,844,009 + Shewana3_1575 0.78 -2.6
1,844,271 + -1.2
1,844,410 - -0.7
1,845,006 - Shewana3_1576 0.24 +0.1
1,845,016 - Shewana3_1576 0.25 +0.2
1,845,379 + Shewana3_1576 0.44 +0.8

Or see this region's nucleotide sequence