Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1487 and Shewana3_1488 are separated by 89 nucleotides Shewana3_1488 and Shewana3_1489 are separated by 165 nucleotides
Shewana3_1487: Shewana3_1487 - porin (RefSeq), at 1,732,244 to 1,733,413
_1487
Shewana3_1488: Shewana3_1488 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,733,503 to 1,735,029
_1488
Shewana3_1489: Shewana3_1489 - flavocytochrome c (RefSeq), at 1,735,195 to 1,736,748
_1489
Position (kb)
1733
1734
1735
1736 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1732.520 kb on - strand, within Shewana3_1487 at 1732.877 kb on - strand, within Shewana3_1487 at 1733.095 kb on + strand, within Shewana3_1487 at 1733.165 kb on + strand, within Shewana3_1487 at 1733.252 kb on + strand, within Shewana3_1487 at 1733.366 kb on + strand at 1733.673 kb on - strand, within Shewana3_1488 at 1733.797 kb on - strand, within Shewana3_1488 at 1733.798 kb on - strand, within Shewana3_1488 at 1733.938 kb on + strand, within Shewana3_1488 at 1734.030 kb on - strand, within Shewana3_1488 at 1734.124 kb on - strand, within Shewana3_1488 at 1734.124 kb on - strand, within Shewana3_1488 at 1734.380 kb on + strand, within Shewana3_1488 at 1734.426 kb on + strand, within Shewana3_1488 at 1734.575 kb on - strand, within Shewana3_1488 at 1734.658 kb on - strand, within Shewana3_1488 at 1734.747 kb on + strand, within Shewana3_1488 at 1734.797 kb on - strand, within Shewana3_1488 at 1734.831 kb on + strand, within Shewana3_1488 at 1734.835 kb on - strand, within Shewana3_1488 at 1734.983 kb on + strand at 1734.993 kb on - strand at 1735.323 kb on - strand at 1735.408 kb on + strand, within Shewana3_1489 at 1735.484 kb on + strand, within Shewana3_1489 at 1735.526 kb on + strand, within Shewana3_1489 at 1735.534 kb on - strand, within Shewana3_1489 at 1735.571 kb on + strand, within Shewana3_1489 at 1735.652 kb on + strand, within Shewana3_1489 at 1735.737 kb on + strand, within Shewana3_1489 at 1735.737 kb on + strand, within Shewana3_1489 at 1735.834 kb on - strand, within Shewana3_1489
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,732,520 - Shewana3_1487 0.24 +0.6 1,732,877 - Shewana3_1487 0.54 +0.2 1,733,095 + Shewana3_1487 0.73 -1.5 1,733,165 + Shewana3_1487 0.79 -0.6 1,733,252 + Shewana3_1487 0.86 -1.2 1,733,366 + +0.2 1,733,673 - Shewana3_1488 0.11 +0.0 1,733,797 - Shewana3_1488 0.19 -0.2 1,733,798 - Shewana3_1488 0.19 -2.4 1,733,938 + Shewana3_1488 0.28 -1.4 1,734,030 - Shewana3_1488 0.35 -1.6 1,734,124 - Shewana3_1488 0.41 -1.3 1,734,124 - Shewana3_1488 0.41 -1.6 1,734,380 + Shewana3_1488 0.57 +0.1 1,734,426 + Shewana3_1488 0.60 -0.1 1,734,575 - Shewana3_1488 0.70 -5.1 1,734,658 - Shewana3_1488 0.76 +0.5 1,734,747 + Shewana3_1488 0.81 -0.9 1,734,797 - Shewana3_1488 0.85 -0.1 1,734,831 + Shewana3_1488 0.87 +0.3 1,734,835 - Shewana3_1488 0.87 +0.4 1,734,983 + -2.0 1,734,993 - +0.9 1,735,323 - -0.1 1,735,408 + Shewana3_1489 0.14 -0.1 1,735,484 + Shewana3_1489 0.19 +0.3 1,735,526 + Shewana3_1489 0.21 +1.1 1,735,534 - Shewana3_1489 0.22 +0.9 1,735,571 + Shewana3_1489 0.24 +0.2 1,735,652 + Shewana3_1489 0.29 +0.7 1,735,737 + Shewana3_1489 0.35 +0.2 1,735,737 + Shewana3_1489 0.35 +0.9 1,735,834 - Shewana3_1489 0.41 +0.7
Or see this region's nucleotide sequence