Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1216

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1215 and Shewana3_1216 are separated by 531 nucleotidesShewana3_1216 and Shewana3_1217 are separated by 211 nucleotidesShewana3_1217 and Shewana3_1218 are separated by 127 nucleotides Shewana3_1215: Shewana3_1215 - hypothetical protein (RefSeq), at 1,420,034 to 1,420,816 _1215 Shewana3_1216: Shewana3_1216 - acetyltransferase (RefSeq), at 1,421,348 to 1,421,806 _1216 Shewana3_1217: Shewana3_1217 - hypothetical protein (RefSeq), at 1,422,018 to 1,422,227 _1217 Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657 _1218 Position (kb) 1421 1422Strain fitness (log2 ratio) -3 -2 -1 0 1at 1420.348 kb on + strand, within Shewana3_1215at 1420.411 kb on + strand, within Shewana3_1215at 1420.585 kb on + strand, within Shewana3_1215at 1420.593 kb on - strand, within Shewana3_1215at 1420.648 kb on + strand, within Shewana3_1215at 1420.832 kb on + strandat 1420.861 kb on - strandat 1421.136 kb on + strandat 1421.243 kb on + strandat 1421.399 kb on + strand, within Shewana3_1216at 1421.487 kb on - strand, within Shewana3_1216at 1421.624 kb on + strand, within Shewana3_1216at 1421.656 kb on + strand, within Shewana3_1216at 1421.664 kb on + strand, within Shewana3_1216at 1421.825 kb on + strandat 1421.825 kb on + strandat 1421.837 kb on + strandat 1421.837 kb on + strandat 1421.845 kb on - strandat 1422.104 kb on + strand, within Shewana3_1217at 1422.188 kb on - strand, within Shewana3_1217at 1422.201 kb on - strand, within Shewana3_1217at 1422.226 kb on - strandat 1422.472 kb on + strand, within Shewana3_1218

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
1,420,348 + Shewana3_1215 0.40 +0.1
1,420,411 + Shewana3_1215 0.48 +0.2
1,420,585 + Shewana3_1215 0.70 +0.5
1,420,593 - Shewana3_1215 0.71 +0.4
1,420,648 + Shewana3_1215 0.78 -1.1
1,420,832 + +0.5
1,420,861 - -2.7
1,421,136 + +0.6
1,421,243 + +0.3
1,421,399 + Shewana3_1216 0.11 +1.5
1,421,487 - Shewana3_1216 0.30 -1.4
1,421,624 + Shewana3_1216 0.60 +0.3
1,421,656 + Shewana3_1216 0.67 +0.4
1,421,664 + Shewana3_1216 0.69 +0.6
1,421,825 + +0.1
1,421,825 + -0.0
1,421,837 + +0.3
1,421,837 + +0.2
1,421,845 - -3.5
1,422,104 + Shewana3_1217 0.41 -1.5
1,422,188 - Shewana3_1217 0.81 +0.6
1,422,201 - Shewana3_1217 0.87 +0.2
1,422,226 - +0.3
1,422,472 + Shewana3_1218 0.39 +0.1

Or see this region's nucleotide sequence