Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1140 and Shewana3_1141 are separated by 65 nucleotides Shewana3_1141 and Shewana3_1142 are separated by 266 nucleotides Shewana3_1142 and Shewana3_1143 are separated by 170 nucleotides
Shewana3_1140: Shewana3_1140 - homoserine kinase (RefSeq), at 1,345,289 to 1,346,227
_1140
Shewana3_1141: Shewana3_1141 - threonine synthase (RefSeq), at 1,346,293 to 1,347,576
_1141
Shewana3_1142: Shewana3_1142 - hypothetical protein (RefSeq), at 1,347,843 to 1,348,136
_1142
Shewana3_1143: Shewana3_1143 - extracellular solute-binding protein (RefSeq), at 1,348,307 to 1,349,182
_1143
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1345.293 kb on - strand at 1345.820 kb on - strand, within Shewana3_1140 at 1345.928 kb on + strand, within Shewana3_1140 at 1345.935 kb on + strand, within Shewana3_1140 at 1345.943 kb on - strand, within Shewana3_1140 at 1345.970 kb on + strand, within Shewana3_1140 at 1345.972 kb on - strand, within Shewana3_1140 at 1345.978 kb on - strand, within Shewana3_1140 at 1345.995 kb on - strand, within Shewana3_1140 at 1346.215 kb on - strand at 1346.252 kb on + strand at 1346.281 kb on + strand at 1346.362 kb on + strand at 1346.485 kb on - strand, within Shewana3_1141 at 1347.010 kb on + strand, within Shewana3_1141 at 1347.075 kb on - strand, within Shewana3_1141 at 1347.153 kb on + strand, within Shewana3_1141 at 1347.161 kb on - strand, within Shewana3_1141 at 1347.281 kb on - strand, within Shewana3_1141 at 1347.333 kb on - strand, within Shewana3_1141 at 1347.377 kb on + strand, within Shewana3_1141 at 1347.429 kb on + strand, within Shewana3_1141 at 1347.513 kb on - strand at 1347.565 kb on + strand at 1347.573 kb on - strand at 1347.575 kb on - strand at 1347.892 kb on - strand, within Shewana3_1142 at 1347.985 kb on - strand, within Shewana3_1142 at 1348.000 kb on + strand, within Shewana3_1142 at 1348.097 kb on + strand, within Shewana3_1142 at 1348.116 kb on + strand at 1348.124 kb on - strand at 1348.265 kb on + strand at 1348.450 kb on - strand, within Shewana3_1143
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,345,293 - -4.1 1,345,820 - Shewana3_1140 0.57 -5.2 1,345,928 + Shewana3_1140 0.68 -1.9 1,345,935 + Shewana3_1140 0.69 -4.5 1,345,943 - Shewana3_1140 0.70 -4.9 1,345,970 + Shewana3_1140 0.73 -5.4 1,345,972 - Shewana3_1140 0.73 -5.8 1,345,978 - Shewana3_1140 0.73 -6.5 1,345,995 - Shewana3_1140 0.75 -2.1 1,346,215 - -6.5 1,346,252 + -3.1 1,346,281 + -6.5 1,346,362 + -4.2 1,346,485 - Shewana3_1141 0.15 -5.6 1,347,010 + Shewana3_1141 0.56 -4.3 1,347,075 - Shewana3_1141 0.61 -5.9 1,347,153 + Shewana3_1141 0.67 -5.7 1,347,161 - Shewana3_1141 0.68 -5.3 1,347,281 - Shewana3_1141 0.77 -5.5 1,347,333 - Shewana3_1141 0.81 -4.5 1,347,377 + Shewana3_1141 0.84 -5.9 1,347,429 + Shewana3_1141 0.88 -3.0 1,347,513 - -4.7 1,347,565 + -4.1 1,347,573 - -3.5 1,347,575 - -5.2 1,347,892 - Shewana3_1142 0.17 -0.8 1,347,985 - Shewana3_1142 0.48 +0.1 1,348,000 + Shewana3_1142 0.53 -2.0 1,348,097 + Shewana3_1142 0.86 +0.0 1,348,116 + -2.9 1,348,124 - -1.0 1,348,265 + -0.2 1,348,450 - Shewana3_1143 0.16 +0.2
Or see this region's nucleotide sequence