Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0613 and Shewana3_0614 are separated by 139 nucleotides Shewana3_0614 and Shewana3_0615 overlap by 4 nucleotides Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides
Shewana3_0613: Shewana3_0613 - hypothetical protein (RefSeq), at 718,878 to 719,681
_0613
Shewana3_0614: Shewana3_0614 - ATPase domain-containing protein (RefSeq), at 719,821 to 721,149
_0614
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -2
-1
0
1 at 718.972 kb on - strand, within Shewana3_0613 at 719.203 kb on + strand, within Shewana3_0613 at 719.299 kb on + strand, within Shewana3_0613 at 719.338 kb on + strand, within Shewana3_0613 at 719.366 kb on + strand, within Shewana3_0613 at 719.398 kb on - strand, within Shewana3_0613 at 719.407 kb on - strand, within Shewana3_0613 at 719.442 kb on + strand, within Shewana3_0613 at 719.456 kb on - strand, within Shewana3_0613 at 719.620 kb on - strand at 719.762 kb on + strand at 719.830 kb on + strand at 719.849 kb on + strand at 719.923 kb on + strand at 719.972 kb on - strand, within Shewana3_0614 at 720.008 kb on - strand, within Shewana3_0614 at 720.015 kb on + strand, within Shewana3_0614 at 720.023 kb on - strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.062 kb on - strand, within Shewana3_0614 at 720.150 kb on + strand, within Shewana3_0614 at 720.374 kb on + strand, within Shewana3_0614 at 720.498 kb on - strand, within Shewana3_0614 at 720.531 kb on + strand, within Shewana3_0614 at 720.539 kb on - strand, within Shewana3_0614 at 720.729 kb on + strand, within Shewana3_0614 at 720.965 kb on - strand, within Shewana3_0614 at 721.116 kb on + strand at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 718,972 - Shewana3_0613 0.12 +0.1 719,203 + Shewana3_0613 0.40 -1.7 719,299 + Shewana3_0613 0.52 -1.1 719,338 + Shewana3_0613 0.57 +0.4 719,366 + Shewana3_0613 0.61 -1.5 719,398 - Shewana3_0613 0.65 -1.6 719,407 - Shewana3_0613 0.66 +0.1 719,442 + Shewana3_0613 0.70 -1.0 719,456 - Shewana3_0613 0.72 +0.2 719,620 - +0.6 719,762 + +0.3 719,830 + -2.1 719,849 + +0.8 719,923 + -1.9 719,972 - Shewana3_0614 0.11 -1.4 720,008 - Shewana3_0614 0.14 +0.3 720,015 + Shewana3_0614 0.15 +0.3 720,023 - Shewana3_0614 0.15 -1.9 720,037 + Shewana3_0614 0.16 -1.0 720,037 + Shewana3_0614 0.16 -0.1 720,062 - Shewana3_0614 0.18 +0.7 720,150 + Shewana3_0614 0.25 -1.4 720,374 + Shewana3_0614 0.42 -1.9 720,498 - Shewana3_0614 0.51 -0.5 720,531 + Shewana3_0614 0.53 +0.4 720,539 - Shewana3_0614 0.54 +0.2 720,729 + Shewana3_0614 0.68 +0.0 720,965 - Shewana3_0614 0.86 -1.5 721,116 + -2.0 721,231 - Shewana3_0615 0.13 +0.3 721,341 - Shewana3_0615 0.29 -1.5 721,436 - Shewana3_0615 0.43 +1.2 721,544 + Shewana3_0615 0.59 -1.7 721,559 - Shewana3_0615 0.61 +0.3 721,661 + Shewana3_0615 0.76 -0.6 721,683 + Shewana3_0615 0.80 -1.3 721,839 + Shewana3_0616 0.11 +0.3 721,852 - Shewana3_0616 0.15 +0.3 722,045 + Shewana3_0616 0.70 -0.0
Or see this region's nucleotide sequence