Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1387 and Shew_1388 overlap by 8 nucleotides Shew_1388 and Shew_1389 are separated by 46 nucleotides Shew_1389 and Shew_1390 overlap by 17 nucleotides Shew_1390 and Shew_1391 are separated by 7 nucleotides
Shew_1387: Shew_1387 - chemotaxis-specific methylesterase (RefSeq), at 1,596,979 to 1,598,088
_1387
Shew_1388: Shew_1388 - hypothetical protein (RefSeq), at 1,598,081 to 1,598,704
_1388
Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542
_1389
Shew_1390: Shew_1390 - CheW protein (RefSeq), at 1,599,526 to 1,600,515
_1390
Shew_1391: Shew_1391 - CheW protein (RefSeq), at 1,600,523 to 1,601,017
_1391
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1597.785 kb on + strand, within Shew_1387 at 1598.107 kb on - strand at 1598.169 kb on + strand, within Shew_1388 at 1598.902 kb on - strand, within Shew_1389 at 1598.985 kb on - strand, within Shew_1389 at 1599.078 kb on - strand, within Shew_1389 at 1599.472 kb on + strand at 1599.527 kb on + strand at 1600.112 kb on - strand, within Shew_1390 at 1600.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 1,597,785 + Shew_1387 0.73 +0.7 1,598,107 - +1.8 1,598,169 + Shew_1388 0.14 +0.8 1,598,902 - Shew_1389 0.19 +0.8 1,598,985 - Shew_1389 0.30 -2.0 1,599,078 - Shew_1389 0.41 -0.4 1,599,472 + +0.4 1,599,527 + +0.4 1,600,112 - Shew_1390 0.59 -0.4 1,600,495 + -0.6
Or see this region's nucleotide sequence