Strain Fitness in Shewanella loihica PV-4 around Shew_1066

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrimM and trmD are separated by 15 nucleotidestrmD and rplS are separated by 34 nucleotidesrplS and Shew_1067 are separated by 404 nucleotides Shew_1064: rimM - 16S rRNA-processing protein (RefSeq), at 1,225,952 to 1,226,482 rimM Shew_1065: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,226,498 to 1,227,244 trmD Shew_1066: rplS - 50S ribosomal protein L19 (RefSeq), at 1,227,279 to 1,227,629 rplS Shew_1067: Shew_1067 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 1,228,034 to 1,229,125 _1067 Position (kb) 1227 1228Strain fitness (log2 ratio) -1 0 1at 1227.791 kb on + strandat 1227.822 kb on - strandat 1228.023 kb on - strandat 1228.032 kb on - strandat 1228.163 kb on + strand, within Shew_1067at 1228.261 kb on + strand, within Shew_1067at 1228.282 kb on + strand, within Shew_1067at 1228.337 kb on + strand, within Shew_1067

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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1,227,791 + +0.9
1,227,822 - +0.7
1,228,023 - -0.2
1,228,032 - -0.0
1,228,163 + Shew_1067 0.12 -0.5
1,228,261 + Shew_1067 0.21 -0.5
1,228,282 + Shew_1067 0.23 -1.2
1,228,337 + Shew_1067 0.28 +0.7

Or see this region's nucleotide sequence