Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2337 and Pf6N2E2_2338 are separated by 154 nucleotides Pf6N2E2_2338 and Pf6N2E2_2339 are separated by 19 nucleotides
Pf6N2E2_2337 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 2,767,763 to 2,770,162
_2337
Pf6N2E2_2338 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 2,770,317 to 2,771,159
_2338
Pf6N2E2_2339 - Guanine deaminase (EC 3.5.4.3), at 2,771,179 to 2,772,483
_2339
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2769.452 kb on + strand, within Pf6N2E2_2337 at 2769.452 kb on + strand, within Pf6N2E2_2337 at 2769.453 kb on - strand, within Pf6N2E2_2337 at 2769.453 kb on - strand, within Pf6N2E2_2337 at 2769.453 kb on - strand, within Pf6N2E2_2337 at 2769.546 kb on - strand, within Pf6N2E2_2337 at 2769.546 kb on - strand, within Pf6N2E2_2337 at 2769.581 kb on + strand, within Pf6N2E2_2337 at 2769.582 kb on - strand, within Pf6N2E2_2337 at 2769.582 kb on - strand, within Pf6N2E2_2337 at 2769.600 kb on - strand, within Pf6N2E2_2337 at 2769.602 kb on + strand, within Pf6N2E2_2337 at 2769.602 kb on + strand, within Pf6N2E2_2337 at 2769.602 kb on + strand, within Pf6N2E2_2337 at 2769.603 kb on - strand, within Pf6N2E2_2337 at 2769.603 kb on - strand, within Pf6N2E2_2337 at 2769.603 kb on - strand, within Pf6N2E2_2337 at 2769.635 kb on + strand, within Pf6N2E2_2337 at 2769.635 kb on + strand, within Pf6N2E2_2337 at 2769.635 kb on + strand, within Pf6N2E2_2337 at 2769.636 kb on - strand, within Pf6N2E2_2337 at 2769.636 kb on - strand, within Pf6N2E2_2337 at 2769.636 kb on - strand, within Pf6N2E2_2337 at 2769.638 kb on + strand, within Pf6N2E2_2337 at 2769.638 kb on + strand, within Pf6N2E2_2337 at 2769.638 kb on + strand, within Pf6N2E2_2337 at 2769.639 kb on - strand, within Pf6N2E2_2337 at 2769.639 kb on - strand, within Pf6N2E2_2337 at 2769.639 kb on - strand, within Pf6N2E2_2337 at 2769.639 kb on - strand, within Pf6N2E2_2337 at 2769.639 kb on - strand, within Pf6N2E2_2337 at 2769.641 kb on + strand, within Pf6N2E2_2337 at 2769.641 kb on + strand, within Pf6N2E2_2337 at 2769.641 kb on + strand, within Pf6N2E2_2337 at 2769.695 kb on + strand, within Pf6N2E2_2337 at 2769.695 kb on + strand, within Pf6N2E2_2337 at 2769.863 kb on + strand, within Pf6N2E2_2337 at 2769.863 kb on + strand, within Pf6N2E2_2337 at 2769.863 kb on + strand, within Pf6N2E2_2337 at 2770.037 kb on + strand at 2770.149 kb on + strand at 2770.149 kb on + strand at 2770.150 kb on - strand at 2770.150 kb on - strand at 2770.150 kb on - strand at 2770.181 kb on - strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.316 kb on + strand at 2770.317 kb on - strand at 2770.317 kb on - strand at 2770.317 kb on - strand at 2770.317 kb on - strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.320 kb on + strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.321 kb on - strand at 2770.482 kb on + strand, within Pf6N2E2_2338 at 2770.482 kb on + strand, within Pf6N2E2_2338 at 2770.483 kb on - strand, within Pf6N2E2_2338 at 2770.483 kb on - strand, within Pf6N2E2_2338 at 2770.483 kb on - strand, within Pf6N2E2_2338 at 2770.483 kb on - strand, within Pf6N2E2_2338 at 2770.815 kb on + strand, within Pf6N2E2_2338 at 2770.815 kb on + strand, within Pf6N2E2_2338 at 2770.815 kb on + strand, within Pf6N2E2_2338 at 2770.816 kb on - strand, within Pf6N2E2_2338 at 2770.816 kb on - strand, within Pf6N2E2_2338 at 2770.816 kb on - strand, within Pf6N2E2_2338 at 2770.894 kb on - strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.070 kb on + strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.071 kb on - strand, within Pf6N2E2_2338 at 2771.126 kb on - strand at 2771.261 kb on - strand at 2771.261 kb on - strand at 2771.261 kb on - strand at 2771.261 kb on - strand at 2771.267 kb on - strand at 2771.267 kb on - strand at 2771.267 kb on - strand at 2771.267 kb on - strand at 2771.447 kb on - strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.479 kb on + strand, within Pf6N2E2_2339 at 2771.480 kb on - strand, within Pf6N2E2_2339 at 2771.480 kb on - strand, within Pf6N2E2_2339 at 2771.480 kb on - strand, within Pf6N2E2_2339 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.722 kb on + strand, within Pf6N2E2_2339 at 2771.776 kb on + strand, within Pf6N2E2_2339 at 2771.863 kb on + strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.950 kb on + strand, within Pf6N2E2_2339 at 2771.950 kb on + strand, within Pf6N2E2_2339 at 2771.951 kb on - strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,769,452 + Pf6N2E2_2337 0.70 +0.6 2,769,452 + Pf6N2E2_2337 0.70 +0.1 2,769,453 - Pf6N2E2_2337 0.70 +0.3 2,769,453 - Pf6N2E2_2337 0.70 +0.8 2,769,453 - Pf6N2E2_2337 0.70 +0.2 2,769,546 - Pf6N2E2_2337 0.74 +0.7 2,769,546 - Pf6N2E2_2337 0.74 -0.2 2,769,581 + Pf6N2E2_2337 0.76 +0.7 2,769,582 - Pf6N2E2_2337 0.76 -0.5 2,769,582 - Pf6N2E2_2337 0.76 -0.2 2,769,600 - Pf6N2E2_2337 0.77 -1.0 2,769,602 + Pf6N2E2_2337 0.77 +0.2 2,769,602 + Pf6N2E2_2337 0.77 -0.5 2,769,602 + Pf6N2E2_2337 0.77 -0.0 2,769,603 - Pf6N2E2_2337 0.77 +0.6 2,769,603 - Pf6N2E2_2337 0.77 +0.1 2,769,603 - Pf6N2E2_2337 0.77 +0.3 2,769,635 + Pf6N2E2_2337 0.78 +1.5 2,769,635 + Pf6N2E2_2337 0.78 +0.5 2,769,635 + Pf6N2E2_2337 0.78 +1.0 2,769,636 - Pf6N2E2_2337 0.78 -0.4 2,769,636 - Pf6N2E2_2337 0.78 +1.1 2,769,636 - Pf6N2E2_2337 0.78 -0.4 2,769,638 + Pf6N2E2_2337 0.78 +0.0 2,769,638 + Pf6N2E2_2337 0.78 +0.1 2,769,638 + Pf6N2E2_2337 0.78 +0.4 2,769,639 - Pf6N2E2_2337 0.78 -0.3 2,769,639 - Pf6N2E2_2337 0.78 -0.0 2,769,639 - Pf6N2E2_2337 0.78 +0.2 2,769,639 - Pf6N2E2_2337 0.78 +0.6 2,769,639 - Pf6N2E2_2337 0.78 +0.8 2,769,641 + Pf6N2E2_2337 0.78 +0.0 2,769,641 + Pf6N2E2_2337 0.78 +0.8 2,769,641 + Pf6N2E2_2337 0.78 -0.2 2,769,695 + Pf6N2E2_2337 0.81 +0.4 2,769,695 + Pf6N2E2_2337 0.81 +1.4 2,769,863 + Pf6N2E2_2337 0.88 +1.0 2,769,863 + Pf6N2E2_2337 0.88 +0.2 2,769,863 + Pf6N2E2_2337 0.88 +0.5 2,770,037 + +0.6 2,770,149 + -0.3 2,770,149 + -0.0 2,770,150 - -1.0 2,770,150 - +0.6 2,770,150 - +0.0 2,770,181 - +0.8 2,770,316 + -0.3 2,770,316 + -0.0 2,770,316 + -0.7 2,770,316 + +0.3 2,770,316 + +0.3 2,770,316 + -0.4 2,770,316 + -0.2 2,770,316 + +0.6 2,770,316 + -1.7 2,770,316 + +0.5 2,770,317 - +0.3 2,770,317 - -1.0 2,770,317 - +0.7 2,770,317 - -0.3 2,770,320 + +1.0 2,770,320 + +0.8 2,770,320 + +0.2 2,770,320 + +0.3 2,770,320 + +0.6 2,770,320 + +0.6 2,770,320 + -0.8 2,770,321 - -0.5 2,770,321 - +0.6 2,770,321 - -0.8 2,770,321 - -1.4 2,770,321 - +0.6 2,770,321 - -0.9 2,770,321 - -0.0 2,770,321 - -2.2 2,770,482 + Pf6N2E2_2338 0.20 +0.3 2,770,482 + Pf6N2E2_2338 0.20 -0.1 2,770,483 - Pf6N2E2_2338 0.20 +1.0 2,770,483 - Pf6N2E2_2338 0.20 -0.7 2,770,483 - Pf6N2E2_2338 0.20 -0.1 2,770,483 - Pf6N2E2_2338 0.20 +0.4 2,770,815 + Pf6N2E2_2338 0.59 -1.0 2,770,815 + Pf6N2E2_2338 0.59 -0.4 2,770,815 + Pf6N2E2_2338 0.59 -0.0 2,770,816 - Pf6N2E2_2338 0.59 -0.1 2,770,816 - Pf6N2E2_2338 0.59 +0.2 2,770,816 - Pf6N2E2_2338 0.59 +0.7 2,770,894 - Pf6N2E2_2338 0.68 +0.2 2,771,070 + Pf6N2E2_2338 0.89 +1.3 2,771,070 + Pf6N2E2_2338 0.89 -0.4 2,771,070 + Pf6N2E2_2338 0.89 -0.2 2,771,070 + Pf6N2E2_2338 0.89 -0.4 2,771,070 + Pf6N2E2_2338 0.89 -0.2 2,771,070 + Pf6N2E2_2338 0.89 +0.4 2,771,070 + Pf6N2E2_2338 0.89 -0.9 2,771,070 + Pf6N2E2_2338 0.89 -1.0 2,771,070 + Pf6N2E2_2338 0.89 -3.1 2,771,071 - Pf6N2E2_2338 0.89 +0.3 2,771,071 - Pf6N2E2_2338 0.89 -0.1 2,771,071 - Pf6N2E2_2338 0.89 +0.2 2,771,071 - Pf6N2E2_2338 0.89 -0.9 2,771,071 - Pf6N2E2_2338 0.89 -0.0 2,771,071 - Pf6N2E2_2338 0.89 +0.2 2,771,071 - Pf6N2E2_2338 0.89 +0.7 2,771,071 - Pf6N2E2_2338 0.89 -1.4 2,771,126 - -0.3 2,771,261 - +1.6 2,771,261 - +0.5 2,771,261 - +0.9 2,771,261 - -0.9 2,771,267 - -0.2 2,771,267 - +0.1 2,771,267 - +0.4 2,771,267 - +0.2 2,771,447 - Pf6N2E2_2339 0.21 +0.8 2,771,479 + Pf6N2E2_2339 0.23 +0.7 2,771,479 + Pf6N2E2_2339 0.23 +0.1 2,771,479 + Pf6N2E2_2339 0.23 -0.0 2,771,479 + Pf6N2E2_2339 0.23 +0.5 2,771,479 + Pf6N2E2_2339 0.23 +0.4 2,771,479 + Pf6N2E2_2339 0.23 -0.7 2,771,479 + Pf6N2E2_2339 0.23 -1.2 2,771,479 + Pf6N2E2_2339 0.23 -0.1 2,771,480 - Pf6N2E2_2339 0.23 +0.4 2,771,480 - Pf6N2E2_2339 0.23 -0.2 2,771,480 - Pf6N2E2_2339 0.23 -0.2 2,771,695 + Pf6N2E2_2339 0.40 +0.5 2,771,695 + Pf6N2E2_2339 0.40 -0.6 2,771,695 + Pf6N2E2_2339 0.40 +0.6 2,771,722 + Pf6N2E2_2339 0.42 -0.9 2,771,776 + Pf6N2E2_2339 0.46 -0.2 2,771,863 + Pf6N2E2_2339 0.52 -0.3 2,771,864 - Pf6N2E2_2339 0.52 +0.1 2,771,864 - Pf6N2E2_2339 0.52 -0.1 2,771,864 - Pf6N2E2_2339 0.52 -0.5 2,771,864 - Pf6N2E2_2339 0.52 +0.1 2,771,864 - Pf6N2E2_2339 0.52 -0.7 2,771,950 + Pf6N2E2_2339 0.59 -0.6 2,771,950 + Pf6N2E2_2339 0.59 -0.2 2,771,951 - Pf6N2E2_2339 0.59 -0.0 2,772,131 + Pf6N2E2_2339 0.73 +0.2 2,772,131 + Pf6N2E2_2339 0.73 +0.8 2,772,131 + Pf6N2E2_2339 0.73 -1.4
Or see this region's nucleotide sequence