Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17190

Experiment: R2A pH6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH6
3,755,721	-		LRK54_RS17185	0.56	+0.3
3,755,845	+		LRK54_RS17185	0.65	+0.2
3,755,845	+		LRK54_RS17185	0.65	-0.8
3,755,845	+		LRK54_RS17185	0.65	+0.1
3,755,845	+		LRK54_RS17185	0.65	+0.1
3,755,845	+		LRK54_RS17185	0.65	-0.8
3,755,845	+		LRK54_RS17185	0.65	+0.1
3,755,845	+		LRK54_RS17185	0.65	-0.4
3,755,845	+		LRK54_RS17185	0.65	-0.8
3,755,846	-		LRK54_RS17185	0.65	+0.0
3,755,846	-		LRK54_RS17185	0.65	-0.4
3,755,846	-		LRK54_RS17185	0.65	+0.6
3,755,846	-		LRK54_RS17185	0.65	+0.1
3,755,846	-		LRK54_RS17185	0.65	-0.6
3,755,846	-		LRK54_RS17185	0.65	-1.0
3,755,846	-		LRK54_RS17185	0.65	+0.7
3,755,846	-		LRK54_RS17185	0.65	+0.6
3,755,846	-		LRK54_RS17185	0.65	-0.2
3,755,846	-		LRK54_RS17185	0.65	+1.6
3,755,846	-		LRK54_RS17185	0.65	+0.9
3,755,846	-		LRK54_RS17185	0.65	-0.8
3,755,846	-		LRK54_RS17185	0.65	-1.8
3,755,846	-		LRK54_RS17185	0.65	+0.3
3,755,900	+		LRK54_RS17185	0.69	-0.5
3,755,900	+		LRK54_RS17185	0.69	+1.0
3,755,900	+		LRK54_RS17185	0.69	+1.3
3,755,900	+		LRK54_RS17185	0.69	+1.0
3,755,901	-		LRK54_RS17185	0.69	-2.3
3,755,901	-		LRK54_RS17185	0.69	-0.0
3,755,901	-		LRK54_RS17185	0.69	+3.1
3,755,901	-		LRK54_RS17185	0.69	+1.2
3,755,901	-		LRK54_RS17185	0.69	-0.6
3,755,901	-		LRK54_RS17185	0.69	+0.1
3,755,901	-		LRK54_RS17185	0.69	-2.3
3,756,011	+		LRK54_RS17185	0.77	+1.1
3,756,011	+		LRK54_RS17185	0.77	-0.6
3,756,011	+		LRK54_RS17185	0.77	+0.8
3,756,011	+		LRK54_RS17185	0.77	-0.3
3,756,011	+		LRK54_RS17185	0.77	+0.6
3,756,011	+		LRK54_RS17185	0.77	-1.2
3,756,011	+		LRK54_RS17185	0.77	-3.2
3,756,011	+		LRK54_RS17185	0.77	+0.4
3,756,011	+		LRK54_RS17185	0.77	+1.6
3,756,011	+		LRK54_RS17185	0.77	+1.1
3,756,011	+		LRK54_RS17185	0.77	+1.0
3,756,011	+		LRK54_RS17185	0.77	+0.9
3,756,011	+		LRK54_RS17185	0.77	-0.1
3,756,011	+		LRK54_RS17185	0.77	+0.4
3,756,012	-		LRK54_RS17185	0.77	+1.8
3,756,012	-		LRK54_RS17185	0.77	-1.3
3,756,012	-		LRK54_RS17185	0.77	-1.1
3,756,012	-		LRK54_RS17185	0.77	+0.0
3,756,012	-		LRK54_RS17185	0.77	-1.1
3,756,012	-		LRK54_RS17185	0.77	+0.5
3,756,012	-		LRK54_RS17185	0.77	-1.4
3,756,012	-		LRK54_RS17185	0.77	-0.0
3,756,012	-		LRK54_RS17185	0.77	-0.2
3,756,012	-		LRK54_RS17185	0.77	+1.1
3,756,012	-		LRK54_RS17185	0.77	-0.2
3,756,012	-		LRK54_RS17185	0.77	+0.4
3,756,012	-		LRK54_RS17185	0.77	+1.6
3,756,012	-		LRK54_RS17185	0.77	-0.1
3,756,012	-		LRK54_RS17185	0.77	+0.6
3,756,012	-		LRK54_RS17185	0.77	+1.3
3,756,047	+		LRK54_RS17185	0.80	+2.3
3,756,047	+		LRK54_RS17185	0.80	+1.2
3,756,048	-		LRK54_RS17185	0.80	-0.7
3,756,048	-		LRK54_RS17185	0.80	+1.2
3,756,048	-		LRK54_RS17185	0.80	+0.4
3,756,170	+		LRK54_RS17185	0.89	+1.3
3,756,170	+		LRK54_RS17185	0.89	-1.3
3,756,170	+		LRK54_RS17185	0.89	-0.8
3,756,170	+		LRK54_RS17185	0.89	-0.0
3,756,170	+		LRK54_RS17185	0.89	+0.2
3,756,170	+		LRK54_RS17185	0.89	-0.2
3,756,170	+		LRK54_RS17185	0.89	-0.8
3,756,170	+		LRK54_RS17185	0.89	-0.4
3,756,170	+		LRK54_RS17185	0.89	+0.6
3,756,170	+		LRK54_RS17185	0.89	-0.0
3,756,170	+		LRK54_RS17185	0.89	-0.9
3,756,170	+		LRK54_RS17185	0.89	-0.2
3,756,170	+		LRK54_RS17185	0.89	-1.8
3,756,170	+		LRK54_RS17185	0.89	+0.9
3,756,170	+		LRK54_RS17185	0.89	+0.0
3,756,170	+		LRK54_RS17185	0.89	+1.0
3,756,170	+		LRK54_RS17185	0.89	+2.2
3,756,170	+		LRK54_RS17185	0.89	+0.1
3,756,170	+		LRK54_RS17185	0.89	+1.6
3,756,170	+		LRK54_RS17185	0.89	+2.6
3,756,170	+		LRK54_RS17185	0.89	+0.6
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	-0.4
3,756,171	-		LRK54_RS17185	0.89	-1.4
3,756,171	-		LRK54_RS17185	0.89	+1.2
3,756,171	-		LRK54_RS17185	0.89	+1.4
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	+1.2
3,756,171	-		LRK54_RS17185	0.89	+1.3
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	+1.2
3,756,171	-		LRK54_RS17185	0.89	+0.7
3,756,171	-		LRK54_RS17185	0.89	-0.0
3,756,171	-		LRK54_RS17185	0.89	-0.2
3,756,171	-		LRK54_RS17185	0.89	-2.8
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	+0.2
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	+1.6
3,756,171	-		LRK54_RS17185	0.89	+0.6
3,756,171	-		LRK54_RS17185	0.89	+1.3
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	-0.1
3,756,171	-		LRK54_RS17185	0.89	-1.6
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	+1.0
3,756,171	-		LRK54_RS17185	0.89	+0.4
3,756,171	-		LRK54_RS17185	0.89	-0.2
3,756,171	-		LRK54_RS17185	0.89	+1.6
3,756,171	-		LRK54_RS17185	0.89	+0.2
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	-0.6
3,756,324	+				+0.8
3,756,324	+				-0.6
3,756,324	+				+1.2
3,756,324	+				+0.2
3,756,324	+				+0.8
3,756,324	+				-0.2
3,756,324	+				+1.0
3,756,324	+				-0.5
3,756,324	+				+0.2
3,756,325	-				+0.7
3,756,325	-				-0.7
3,756,325	-				+1.2
3,756,325	-				-0.4
3,756,325	-				-0.2
3,756,325	-				+0.7
3,756,325	-				-1.2
3,756,325	-				+1.8
3,756,325	-				-1.1
3,756,325	-				+0.3
3,756,325	-				-0.1
3,756,325	-				+0.2
3,756,325	-				+0.5
3,756,338	+				+0.4
3,756,338	+				-1.4
3,756,338	+				-1.0
3,756,338	+				-1.1
3,756,352	+				+0.1
3,756,352	+				+2.1
3,756,352	+				+0.1
3,756,353	-				+0.1
3,756,353	-				+0.4
3,756,585	+		LRK54_RS17190	0.11	+0.2
3,756,824	+		LRK54_RS17190	0.27	+0.3
3,756,824	+		LRK54_RS17190	0.27	-1.1
3,756,824	+		LRK54_RS17190	0.27	+0.1
3,756,824	+		LRK54_RS17190	0.27	+1.8
3,756,824	+		LRK54_RS17190	0.27	+0.6
3,756,824	+		LRK54_RS17190	0.27	+0.5
3,756,824	+		LRK54_RS17190	0.27	+0.1
3,756,824	+		LRK54_RS17190	0.27	+2.1
3,756,824	+		LRK54_RS17190	0.27	+2.6
3,756,825	-		LRK54_RS17190	0.28	+1.2
3,757,124	+		LRK54_RS17190	0.48	+0.5
3,757,124	+		LRK54_RS17190	0.48	-1.6
3,757,125	-		LRK54_RS17190	0.48	-0.2
3,757,125	-		LRK54_RS17190	0.48	-1.4
3,757,125	-		LRK54_RS17190	0.48	+1.0
3,757,145	+		LRK54_RS17190	0.49	+0.8
3,757,145	+		LRK54_RS17190	0.49	-0.7
3,757,145	+		LRK54_RS17190	0.49	-0.4
3,757,145	+		LRK54_RS17190	0.49	-0.0
3,757,145	+		LRK54_RS17190	0.49	-1.1
3,757,146	-		LRK54_RS17190	0.49	-0.9
3,757,146	-		LRK54_RS17190	0.49	+1.6
3,757,148	-		LRK54_RS17190	0.50	+0.3
3,757,205	+		LRK54_RS17190	0.53	+0.6
3,757,205	+		LRK54_RS17190	0.53	-1.1
3,757,206	-		LRK54_RS17190	0.54	-0.4
3,757,206	-		LRK54_RS17190	0.54	-0.1
3,757,206	-		LRK54_RS17190	0.54	-0.6
3,757,206	-		LRK54_RS17190	0.54	+0.5
3,757,703	+		LRK54_RS17190	0.87	+0.0
3,757,703	+		LRK54_RS17190	0.87	-1.3
3,757,703	+		LRK54_RS17190	0.87	-0.6
3,757,703	+		LRK54_RS17190	0.87	-0.1
3,757,703	+		LRK54_RS17190	0.87	-0.0
3,757,703	+		LRK54_RS17190	0.87	+0.7
3,757,703	+		LRK54_RS17190	0.87	-1.6
3,757,703	+		LRK54_RS17190	0.87	+1.2
3,757,703	+		LRK54_RS17190	0.87	-0.2
3,757,703	+		LRK54_RS17190	0.87	+0.5
3,757,703	+		LRK54_RS17190	0.87	+0.7
3,757,703	+		LRK54_RS17190	0.87	+1.0
3,757,703	+		LRK54_RS17190	0.87	+0.4
3,757,703	+		LRK54_RS17190	0.87	+0.6
3,757,703	+		LRK54_RS17190	0.87	+0.0
3,757,703	+		LRK54_RS17190	0.87	+0.8
3,757,703	+		LRK54_RS17190	0.87	+1.0
3,757,703	+		LRK54_RS17190	0.87	-1.0
3,757,703	+		LRK54_RS17190	0.87	-0.4
3,757,703	+		LRK54_RS17190	0.87	+1.2
3,757,703	+		LRK54_RS17190	0.87	+0.8
3,757,703	+		LRK54_RS17190	0.87	+0.4
3,757,703	+		LRK54_RS17190	0.87	-0.7
3,757,703	+		LRK54_RS17190	0.87	+1.0
3,757,703	+		LRK54_RS17190	0.87	+0.2
3,757,703	+		LRK54_RS17190	0.87	+0.6
3,757,703	+		LRK54_RS17190	0.87	-0.4
3,757,703	+		LRK54_RS17190	0.87	+1.0
3,757,704	+		LRK54_RS17190	0.87	+1.3
3,757,704	-		LRK54_RS17190	0.87	+0.3
3,757,704	-		LRK54_RS17190	0.87	-2.1
3,757,704	-		LRK54_RS17190	0.87	+0.4
3,757,704	-		LRK54_RS17190	0.87	-0.1
3,757,704	-		LRK54_RS17190	0.87	+0.4
3,757,704	-		LRK54_RS17190	0.87	-1.0
3,757,704	-		LRK54_RS17190	0.87	-0.0
3,757,704	-		LRK54_RS17190	0.87	-0.3
3,757,704	-		LRK54_RS17190	0.87	-1.2
3,757,704	-		LRK54_RS17190	0.87	+0.9
3,757,704	-		LRK54_RS17190	0.87	-0.4
3,757,704	-		LRK54_RS17190	0.87	-0.8
3,757,704	-		LRK54_RS17190	0.87	+0.2
3,757,704	-		LRK54_RS17190	0.87	-2.2
3,757,704	-		LRK54_RS17190	0.87	+0.6
3,757,704	-		LRK54_RS17190	0.87	-0.0
3,757,704	-		LRK54_RS17190	0.87	-0.6
3,757,704	-		LRK54_RS17190	0.87	+1.0
3,757,704	-		LRK54_RS17190	0.87	+1.1
3,757,704	-		LRK54_RS17190	0.87	-0.5
3,757,704	-		LRK54_RS17190	0.87	+0.4
3,757,704	-		LRK54_RS17190	0.87	+2.0
3,757,704	-		LRK54_RS17190	0.87	+0.5
3,757,704	-		LRK54_RS17190	0.87	-0.4
3,757,704	-		LRK54_RS17190	0.87	+0.4
3,757,704	-		LRK54_RS17190	0.87	+0.4
3,757,704	-		LRK54_RS17190	0.87	-0.1
3,757,704	-		LRK54_RS17190	0.87	+0.5
3,757,704	-		LRK54_RS17190	0.87	+0.3
3,757,704	-		LRK54_RS17190	0.87	-0.5
3,757,704	-		LRK54_RS17190	0.87	-0.1
3,757,704	-		LRK54_RS17190	0.87	+0.2
3,757,760	+				+0.6
3,757,760	+				-1.2
3,757,760	+				+0.2
3,757,761	-				+0.8
3,757,761	-				-0.0
3,757,898	+				-0.3
3,757,898	+				+1.6
3,757,898	+				+3.6
3,757,899	-				+0.4
3,757,899	-				+1.6
3,757,899	-				-0.8
3,757,899	-				+0.5
3,758,083	+				+0.1
3,758,083	+				+0.0
3,758,083	+				-0.2
3,758,083	+				+1.2
3,758,083	+				-0.9
3,758,084	-				+0.6
3,758,084	-				+1.8
3,758,084	-				-1.0
3,758,125	+				+0.6
3,758,125	+				+0.2
3,758,125	+				+1.0
3,758,125	+				-0.1
3,758,125	+				+1.4
3,758,125	+				-0.0
3,758,126	-				-0.3
3,758,126	-				-0.1
3,758,126	-				-0.2
3,758,126	-				+0.7
3,758,126	-				-1.1
3,758,126	-				+0.1
3,758,126	-				-0.3
3,758,233	+		LRK54_RS17195	0.15	+1.6
3,758,233	+		LRK54_RS17195	0.15	+0.7
3,758,233	+		LRK54_RS17195	0.15	+0.2
3,758,233	+		LRK54_RS17195	0.15	+0.3
3,758,234	-		LRK54_RS17195	0.15	-0.2
3,758,234	-		LRK54_RS17195	0.15	-1.8
3,758,234	-		LRK54_RS17195	0.15	-0.1
3,758,234	-		LRK54_RS17195	0.15	+2.6
3,758,234	-		LRK54_RS17195	0.15	+1.0
3,758,290	+		LRK54_RS17195	0.18	+1.6
3,758,290	+		LRK54_RS17195	0.18	-0.1
3,758,290	+		LRK54_RS17195	0.18	+1.9
3,758,290	+		LRK54_RS17195	0.18	-0.1
3,758,291	-		LRK54_RS17195	0.18	-0.9
3,758,291	-		LRK54_RS17195	0.18	+0.0
3,758,291	-		LRK54_RS17195	0.18	-0.1
3,758,291	-		LRK54_RS17195	0.18	+0.3
3,758,291	-		LRK54_RS17195	0.18	-0.9
3,758,291	-		LRK54_RS17195	0.18	-0.3
3,758,291	-		LRK54_RS17195	0.18	+0.7
3,758,291	-		LRK54_RS17195	0.18	-0.8
3,758,291	-		LRK54_RS17195	0.18	-1.3
3,758,291	-		LRK54_RS17195	0.18	+0.2
3,758,291	-		LRK54_RS17195	0.18	+0.4
3,758,291	-		LRK54_RS17195	0.18	-1.4
3,758,291	-		LRK54_RS17195	0.18	-0.2
3,758,338	+		LRK54_RS17195	0.20	-0.0
3,758,338	+		LRK54_RS17195	0.20	-2.1
3,758,338	+		LRK54_RS17195	0.20	+0.3
3,758,338	+		LRK54_RS17195	0.20	+1.1
3,758,338	+		LRK54_RS17195	0.20	+0.6
3,758,338	+		LRK54_RS17195	0.20	+0.2
3,758,338	+		LRK54_RS17195	0.20	-1.0
3,758,338	+		LRK54_RS17195	0.20	+0.5
3,758,338	+		LRK54_RS17195	0.20	+0.9
3,758,338	+		LRK54_RS17195	0.20	+0.6
3,758,338	+		LRK54_RS17195	0.20	-0.2
3,758,338	+		LRK54_RS17195	0.20	+1.0
3,758,338	+		LRK54_RS17195	0.20	-0.3
3,758,338	+		LRK54_RS17195	0.20	+0.1
3,758,338	+		LRK54_RS17195	0.20	-0.4
3,758,338	+		LRK54_RS17195	0.20	+0.6
3,758,338	+		LRK54_RS17195	0.20	+0.8
3,758,338	+		LRK54_RS17195	0.20	+1.6
3,758,338	+		LRK54_RS17195	0.20	+1.2
3,758,338	+		LRK54_RS17195	0.20	+0.9
3,758,339	-		LRK54_RS17195	0.20	-0.6
3,758,339	-		LRK54_RS17195	0.20	+0.5
3,758,339	-		LRK54_RS17195	0.20	+0.7
3,758,339	-		LRK54_RS17195	0.20	+2.6
3,758,339	-		LRK54_RS17195	0.20	-0.8
3,758,339	-		LRK54_RS17195	0.20	+0.3
3,758,339	-		LRK54_RS17195	0.20	+1.0
3,758,339	-		LRK54_RS17195	0.20	-0.4
3,758,339	-		LRK54_RS17195	0.20	+0.0
3,758,339	-		LRK54_RS17195	0.20	-0.5
3,758,339	-		LRK54_RS17195	0.20	-0.1
3,758,339	-		LRK54_RS17195	0.20	-0.3
3,758,353	+		LRK54_RS17195	0.21	-0.2
3,758,353	+		LRK54_RS17195	0.21	+1.1
3,758,353	+		LRK54_RS17195	0.21	+0.3
3,758,353	+		LRK54_RS17195	0.21	-0.2
3,758,353	+		LRK54_RS17195	0.21	+0.2
3,758,353	+		LRK54_RS17195	0.21	-0.0
3,758,353	+		LRK54_RS17195	0.21	+0.5
3,758,353	+		LRK54_RS17195	0.21	+0.4
3,758,353	+		LRK54_RS17195	0.21	+0.2
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3,758,353	+		LRK54_RS17195	0.21	+1.0
3,758,353	+		LRK54_RS17195	0.21	+2.3
3,758,353	+		LRK54_RS17195	0.21	-0.6
3,758,353	+		LRK54_RS17195	0.21	+3.1
3,758,353	+		LRK54_RS17195	0.21	-1.4
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3,758,354	-		LRK54_RS17195	0.21	-0.4
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3,758,354	-		LRK54_RS17195	0.21	-0.0
3,758,354	-		LRK54_RS17195	0.21	-0.0
3,758,354	-		LRK54_RS17195	0.21	+0.2
3,758,354	-		LRK54_RS17195	0.21	+0.8
3,758,354	-		LRK54_RS17195	0.21	+1.0
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3,758,354	-		LRK54_RS17195	0.21	+0.6
3,758,354	-		LRK54_RS17195	0.21	+0.1
3,758,354	-		LRK54_RS17195	0.21	-1.4
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3,758,354	-		LRK54_RS17195	0.21	-0.9
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3,758,443	+		LRK54_RS17195	0.26	+0.7
3,758,443	+		LRK54_RS17195	0.26	+0.6
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3,758,443	+		LRK54_RS17195	0.26	+1.0
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3,758,551	+		LRK54_RS17195	0.31	-1.0
3,758,552	-		LRK54_RS17195	0.31	-0.0
3,758,552	-		LRK54_RS17195	0.31	+3.9
3,758,552	-		LRK54_RS17195	0.31	+1.7
3,758,584	+		LRK54_RS17195	0.33	-0.1
3,758,584	+		LRK54_RS17195	0.33	+0.3
3,758,584	+		LRK54_RS17195	0.33	+0.9
3,758,584	+		LRK54_RS17195	0.33	+0.3
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3,758,584	+		LRK54_RS17195	0.33	-0.0
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3,758,585	-		LRK54_RS17195	0.33	+3.1
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3,758,585	-		LRK54_RS17195	0.33	+0.6
3,758,585	-		LRK54_RS17195	0.33	-1.1
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3,758,662	+		LRK54_RS17195	0.37	+0.6
3,758,663	-		LRK54_RS17195	0.37	+2.1
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3,758,878	+		LRK54_RS17195	0.48	+0.8
3,758,878	+		LRK54_RS17195	0.48	+2.0
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3,758,879	-		LRK54_RS17195	0.48	+0.4
3,758,879	-		LRK54_RS17195	0.48	-1.1
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3,758,879	-		LRK54_RS17195	0.48	-0.1
3,758,879	-		LRK54_RS17195	0.48	+0.8
3,758,879	-		LRK54_RS17195	0.48	+0.2