Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03395 and CA265_RS03400 overlap by 1 nucleotides CA265_RS03400 and CA265_RS03405 are separated by 143 nucleotides CA265_RS03405 and CA265_RS03410 are separated by 175 nucleotides CA265_RS03410 and CA265_RS03415 overlap by 4 nucleotides CA265_RS03415 and CA265_RS03420 are separated by 51 nucleotides
CA265_RS03395: CA265_RS03395 - DEAD/DEAH box helicase, at 823,732 to 825,078
_RS03395
CA265_RS03400: CA265_RS03400 - hypothetical protein, at 825,078 to 825,347
_RS03400
CA265_RS03405: CA265_RS03405 - gliding motility protein GldC, at 825,491 to 825,826
_RS03405
CA265_RS03410: CA265_RS03410 - hypothetical protein, at 826,002 to 826,400
_RS03410
CA265_RS03415: CA265_RS03415 - hypothetical protein, at 826,397 to 826,906
_RS03415
CA265_RS03420: CA265_RS03420 - hypothetical protein, at 826,958 to 828,022
_RS03420
Position (kb) 826
827 Strain fitness (log2 ratio) -2
-1
0
1 at 825.093 kb on - strand at 825.110 kb on + strand, within CA265_RS03400 at 825.111 kb on - strand, within CA265_RS03400 at 825.192 kb on + strand, within CA265_RS03400 at 825.230 kb on + strand, within CA265_RS03400 at 825.267 kb on - strand, within CA265_RS03400 at 825.275 kb on + strand, within CA265_RS03400 at 825.363 kb on - strand at 825.390 kb on + strand at 825.391 kb on - strand at 825.451 kb on + strand at 825.799 kb on + strand at 825.811 kb on + strand at 825.837 kb on - strand at 825.851 kb on - strand at 825.879 kb on - strand at 825.879 kb on - strand at 825.885 kb on + strand at 826.007 kb on - strand at 826.108 kb on - strand, within CA265_RS03410 at 826.108 kb on - strand, within CA265_RS03410 at 826.131 kb on - strand, within CA265_RS03410 at 826.131 kb on - strand, within CA265_RS03410 at 826.137 kb on - strand, within CA265_RS03410 at 826.140 kb on + strand, within CA265_RS03410 at 826.140 kb on + strand, within CA265_RS03410 at 826.270 kb on - strand, within CA265_RS03410 at 826.275 kb on - strand, within CA265_RS03410 at 826.279 kb on - strand, within CA265_RS03410 at 826.343 kb on - strand, within CA265_RS03410 at 826.541 kb on + strand, within CA265_RS03415 at 826.552 kb on - strand, within CA265_RS03415 at 826.552 kb on - strand, within CA265_RS03415 at 826.552 kb on - strand, within CA265_RS03415 at 826.699 kb on - strand, within CA265_RS03415 at 826.703 kb on - strand, within CA265_RS03415 at 826.719 kb on + strand, within CA265_RS03415 at 826.730 kb on - strand, within CA265_RS03415 at 826.741 kb on - strand, within CA265_RS03415 at 826.889 kb on + strand at 826.925 kb on - strand at 827.001 kb on + strand at 827.001 kb on + strand at 827.001 kb on + strand at 827.008 kb on + strand at 827.048 kb on + strand at 827.073 kb on - strand, within CA265_RS03420 at 827.145 kb on + strand, within CA265_RS03420 at 827.145 kb on + strand, within CA265_RS03420 at 827.146 kb on - strand, within CA265_RS03420 at 827.156 kb on + strand, within CA265_RS03420 at 827.157 kb on - strand, within CA265_RS03420 at 827.176 kb on - strand, within CA265_RS03420 at 827.273 kb on - strand, within CA265_RS03420 at 827.281 kb on + strand, within CA265_RS03420 at 827.281 kb on + strand, within CA265_RS03420 at 827.282 kb on - strand, within CA265_RS03420 at 827.295 kb on - strand, within CA265_RS03420 at 827.327 kb on - strand, within CA265_RS03420 at 827.346 kb on + strand, within CA265_RS03420 at 827.355 kb on - strand, within CA265_RS03420 at 827.355 kb on - strand, within CA265_RS03420
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 825,093 - -0.3 825,110 + CA265_RS03400 0.12 -0.5 825,111 - CA265_RS03400 0.12 -1.1 825,192 + CA265_RS03400 0.42 -0.4 825,230 + CA265_RS03400 0.56 +0.6 825,267 - CA265_RS03400 0.70 -0.1 825,275 + CA265_RS03400 0.73 -2.1 825,363 - +0.4 825,390 + +0.2 825,391 - -0.8 825,451 + -1.4 825,799 + -2.0 825,811 + +0.3 825,837 - +0.8 825,851 - +0.5 825,879 - -1.0 825,879 - +0.6 825,885 + -0.5 826,007 - +0.2 826,108 - CA265_RS03410 0.27 -0.1 826,108 - CA265_RS03410 0.27 -0.2 826,131 - CA265_RS03410 0.32 +0.3 826,131 - CA265_RS03410 0.32 -1.1 826,137 - CA265_RS03410 0.34 -1.2 826,140 + CA265_RS03410 0.35 -0.5 826,140 + CA265_RS03410 0.35 +0.8 826,270 - CA265_RS03410 0.67 +0.5 826,275 - CA265_RS03410 0.68 -1.4 826,279 - CA265_RS03410 0.69 -1.4 826,343 - CA265_RS03410 0.85 -0.2 826,541 + CA265_RS03415 0.28 -0.6 826,552 - CA265_RS03415 0.30 -1.1 826,552 - CA265_RS03415 0.30 +0.2 826,552 - CA265_RS03415 0.30 +1.3 826,699 - CA265_RS03415 0.59 -0.6 826,703 - CA265_RS03415 0.60 -0.3 826,719 + CA265_RS03415 0.63 +0.0 826,730 - CA265_RS03415 0.65 -0.7 826,741 - CA265_RS03415 0.67 +1.3 826,889 + +0.2 826,925 - -0.0 827,001 + +0.2 827,001 + +0.2 827,001 + -0.2 827,008 + +0.6 827,048 + -0.2 827,073 - CA265_RS03420 0.11 -0.1 827,145 + CA265_RS03420 0.18 +0.5 827,145 + CA265_RS03420 0.18 -0.1 827,146 - CA265_RS03420 0.18 -1.8 827,156 + CA265_RS03420 0.19 +0.3 827,157 - CA265_RS03420 0.19 -0.8 827,176 - CA265_RS03420 0.20 +0.3 827,273 - CA265_RS03420 0.30 -1.7 827,281 + CA265_RS03420 0.30 -0.2 827,281 + CA265_RS03420 0.30 +0.2 827,282 - CA265_RS03420 0.30 -0.4 827,295 - CA265_RS03420 0.32 +0.4 827,327 - CA265_RS03420 0.35 -0.2 827,346 + CA265_RS03420 0.36 -0.1 827,355 - CA265_RS03420 0.37 +0.2 827,355 - CA265_RS03420 0.37 -0.1
Or see this region's nucleotide sequence