Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13510

Experiment: CDM1 without Asparagine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13500 and BBR_RS13505 are separated by 207 nucleotidesBBR_RS13505 and BBR_RS13510 are separated by 17 nucleotidesBBR_RS13510 and BBR_RS13515 are separated by 114 nucleotides BBR_RS13500: BBR_RS13500 - elongation factor Tu, at 802,313 to 803,512 _RS13500 BBR_RS13505: BBR_RS13505 - DUF4391 domain-containing protein, at 803,720 to 804,451 _RS13505 BBR_RS13510: BBR_RS13510 - LysR family transcriptional regulator, at 804,469 to 805,284 _RS13510 BBR_RS13515: BBR_RS13515 - putative sulfate exporter family transporter, at 805,399 to 806,463 _RS13515 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1at 803.677 kb on - strandat 803.677 kb on - strandat 803.677 kb on - strandat 803.883 kb on + strand, within BBR_RS13505at 803.934 kb on - strand, within BBR_RS13505at 803.934 kb on - strand, within BBR_RS13505at 803.981 kb on - strand, within BBR_RS13505at 804.005 kb on + strand, within BBR_RS13505at 804.120 kb on + strand, within BBR_RS13505at 804.130 kb on + strand, within BBR_RS13505at 804.150 kb on + strand, within BBR_RS13505at 804.206 kb on + strand, within BBR_RS13505at 804.206 kb on + strand, within BBR_RS13505at 804.439 kb on - strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.446 kb on + strandat 804.454 kb on - strandat 804.454 kb on - strandat 804.459 kb on + strandat 804.467 kb on - strandat 804.488 kb on - strandat 804.499 kb on + strandat 804.506 kb on + strandat 804.509 kb on - strandat 804.516 kb on + strandat 804.516 kb on + strandat 804.596 kb on + strand, within BBR_RS13510at 804.599 kb on - strand, within BBR_RS13510at 804.630 kb on + strand, within BBR_RS13510at 804.653 kb on - strand, within BBR_RS13510at 804.783 kb on - strand, within BBR_RS13510at 804.876 kb on + strand, within BBR_RS13510at 804.876 kb on + strand, within BBR_RS13510at 804.884 kb on - strand, within BBR_RS13510at 804.889 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.935 kb on + strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.943 kb on - strand, within BBR_RS13510at 804.954 kb on - strand, within BBR_RS13510at 804.956 kb on + strand, within BBR_RS13510at 804.991 kb on - strand, within BBR_RS13510at 805.007 kb on + strand, within BBR_RS13510at 805.007 kb on + strand, within BBR_RS13510at 805.028 kb on - strand, within BBR_RS13510at 805.056 kb on - strand, within BBR_RS13510at 805.061 kb on - strand, within BBR_RS13510at 805.078 kb on - strand, within BBR_RS13510at 805.080 kb on + strand, within BBR_RS13510at 805.126 kb on - strand, within BBR_RS13510at 805.126 kb on - strand, within BBR_RS13510at 805.152 kb on + strand, within BBR_RS13510at 805.152 kb on + strand, within BBR_RS13510at 805.154 kb on + strand, within BBR_RS13510at 805.162 kb on - strand, within BBR_RS13510at 805.228 kb on - strandat 805.309 kb on - strandat 805.441 kb on + strandat 805.603 kb on - strand, within BBR_RS13515at 805.613 kb on + strand, within BBR_RS13515at 805.667 kb on + strand, within BBR_RS13515at 805.700 kb on - strand, within BBR_RS13515at 805.702 kb on + strand, within BBR_RS13515at 805.716 kb on + strand, within BBR_RS13515at 805.716 kb on + strand, within BBR_RS13515at 805.770 kb on + strand, within BBR_RS13515at 805.775 kb on + strand, within BBR_RS13515at 805.778 kb on - strand, within BBR_RS13515at 805.791 kb on + strand, within BBR_RS13515at 805.804 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.824 kb on - strand, within BBR_RS13515at 805.864 kb on + strand, within BBR_RS13515at 805.872 kb on - strand, within BBR_RS13515at 805.931 kb on - strand, within BBR_RS13515at 805.956 kb on - strand, within BBR_RS13515at 805.969 kb on + strand, within BBR_RS13515at 805.969 kb on + strand, within BBR_RS13515at 806.016 kb on + strand, within BBR_RS13515at 806.027 kb on - strand, within BBR_RS13515at 806.027 kb on - strand, within BBR_RS13515at 806.078 kb on + strand, within BBR_RS13515at 806.092 kb on - strand, within BBR_RS13515at 806.120 kb on - strand, within BBR_RS13515at 806.177 kb on + strand, within BBR_RS13515at 806.182 kb on + strand, within BBR_RS13515at 806.187 kb on + strand, within BBR_RS13515at 806.242 kb on - strand, within BBR_RS13515at 806.253 kb on + strand, within BBR_RS13515

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Asparagine
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803,677 - +0.0
803,677 - -2.1
803,677 - +0.6
803,883 + BBR_RS13505 0.22 -1.0
803,934 - BBR_RS13505 0.29 +0.9
803,934 - BBR_RS13505 0.29 +1.2
803,981 - BBR_RS13505 0.36 +0.2
804,005 + BBR_RS13505 0.39 +0.5
804,120 + BBR_RS13505 0.55 +0.1
804,130 + BBR_RS13505 0.56 -1.2
804,150 + BBR_RS13505 0.59 -0.0
804,206 + BBR_RS13505 0.66 -0.7
804,206 + BBR_RS13505 0.66 -0.3
804,439 - -0.5
804,446 + -1.3
804,446 + +1.0
804,446 + -0.2
804,446 + -0.0
804,446 + -0.6
804,446 + +0.6
804,446 + +0.4
804,454 - -0.3
804,454 - +0.5
804,459 + +1.4
804,467 - +0.4
804,488 - +0.0
804,499 + -2.5
804,506 + -0.1
804,509 - -2.6
804,516 + -1.4
804,516 + -0.2
804,596 + BBR_RS13510 0.16 -2.1
804,599 - BBR_RS13510 0.16 -1.7
804,630 + BBR_RS13510 0.20 -1.0
804,653 - BBR_RS13510 0.23 -1.5
804,783 - BBR_RS13510 0.38 -1.4
804,876 + BBR_RS13510 0.50 -3.0
804,876 + BBR_RS13510 0.50 -1.4
804,884 - BBR_RS13510 0.51 -2.5
804,889 + BBR_RS13510 0.51 -2.7
804,935 + BBR_RS13510 0.57 +0.6
804,935 + BBR_RS13510 0.57 -1.3
804,935 + BBR_RS13510 0.57 -0.4
804,943 - BBR_RS13510 0.58 -0.7
804,943 - BBR_RS13510 0.58 -1.2
804,943 - BBR_RS13510 0.58 -2.0
804,954 - BBR_RS13510 0.59 -0.4
804,956 + BBR_RS13510 0.60 -1.8
804,991 - BBR_RS13510 0.64 -2.4
805,007 + BBR_RS13510 0.66 -0.7
805,007 + BBR_RS13510 0.66 -1.1
805,028 - BBR_RS13510 0.69 -0.4
805,056 - BBR_RS13510 0.72 -2.2
805,061 - BBR_RS13510 0.73 -0.5
805,078 - BBR_RS13510 0.75 -3.1
805,080 + BBR_RS13510 0.75 -2.2
805,126 - BBR_RS13510 0.81 -2.5
805,126 - BBR_RS13510 0.81 -2.2
805,152 + BBR_RS13510 0.84 -3.3
805,152 + BBR_RS13510 0.84 -2.6
805,154 + BBR_RS13510 0.84 -1.9
805,162 - BBR_RS13510 0.85 -3.2
805,228 - -2.6
805,309 - -1.5
805,441 + +0.9
805,603 - BBR_RS13515 0.19 -0.1
805,613 + BBR_RS13515 0.20 -0.1
805,667 + BBR_RS13515 0.25 -1.8
805,700 - BBR_RS13515 0.28 -1.3
805,702 + BBR_RS13515 0.28 +0.8
805,716 + BBR_RS13515 0.30 -0.7
805,716 + BBR_RS13515 0.30 +0.8
805,770 + BBR_RS13515 0.35 -1.0
805,775 + BBR_RS13515 0.35 -0.1
805,778 - BBR_RS13515 0.36 -1.6
805,791 + BBR_RS13515 0.37 +1.0
805,804 - BBR_RS13515 0.38 +0.2
805,824 - BBR_RS13515 0.40 +0.3
805,824 - BBR_RS13515 0.40 +0.9
805,824 - BBR_RS13515 0.40 +0.9
805,864 + BBR_RS13515 0.44 -2.1
805,872 - BBR_RS13515 0.44 -1.7
805,931 - BBR_RS13515 0.50 -0.8
805,956 - BBR_RS13515 0.52 -0.1
805,969 + BBR_RS13515 0.54 +1.3
805,969 + BBR_RS13515 0.54 -0.2
806,016 + BBR_RS13515 0.58 +0.8
806,027 - BBR_RS13515 0.59 -0.1
806,027 - BBR_RS13515 0.59 -1.2
806,078 + BBR_RS13515 0.64 +0.2
806,092 - BBR_RS13515 0.65 -0.1
806,120 - BBR_RS13515 0.68 +0.2
806,177 + BBR_RS13515 0.73 -1.6
806,182 + BBR_RS13515 0.74 +1.3
806,187 + BBR_RS13515 0.74 +1.2
806,242 - BBR_RS13515 0.79 -2.1
806,253 + BBR_RS13515 0.80 -2.5

Or see this region's nucleotide sequence