Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_935

Experiment: Nickel (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_934 and Ac3H11_935 are separated by 122 nucleotidesAc3H11_935 and Ac3H11_936 are separated by 102 nucleotides Ac3H11_934 - Cell division trigger factor (EC 5.2.1.8), at 51,429 to 52,742 _934 Ac3H11_935 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 52,865 to 53,473 _935 Ac3H11_936 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 53,576 to 54,841 _936 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934at 52.575 kb on + strand, within Ac3H11_934at 52.575 kb on + strand, within Ac3H11_934at 52.576 kb on - strand, within Ac3H11_934at 52.576 kb on - strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.605 kb on + strand, within Ac3H11_934at 52.606 kb on - strand, within Ac3H11_934at 52.606 kb on - strand, within Ac3H11_934at 52.838 kb on + strandat 52.839 kb on - strandat 52.843 kb on + strandat 53.525 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
remove
52,095 + Ac3H11_934 0.51 +0.5
52,095 + Ac3H11_934 0.51 +1.2
52,095 + Ac3H11_934 0.51 +2.1
52,095 + Ac3H11_934 0.51 -0.0
52,096 - Ac3H11_934 0.51 +1.2
52,096 - Ac3H11_934 0.51 +1.1
52,575 + Ac3H11_934 0.87 +0.6
52,575 + Ac3H11_934 0.87 +2.3
52,576 - Ac3H11_934 0.87 -0.6
52,576 - Ac3H11_934 0.87 +0.8
52,605 + Ac3H11_934 0.89 +1.7
52,605 + Ac3H11_934 0.89 +2.4
52,605 + Ac3H11_934 0.89 +2.5
52,605 + Ac3H11_934 0.89 +1.1
52,605 + Ac3H11_934 0.89 +0.8
52,606 - Ac3H11_934 0.90 +1.3
52,606 - Ac3H11_934 0.90 +0.8
52,838 + -0.2
52,839 - -2.4
52,843 + -0.1
53,525 + -0.8

Or see this region's nucleotide sequence