Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_49

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_48 and Ac3H11_49 are separated by 200 nucleotidesAc3H11_49 and Ac3H11_50 are separated by 153 nucleotides Ac3H11_48 - Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2), at 44,586 to 45,563 _48 Ac3H11_49 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 45,764 to 47,614 _49 Ac3H11_50 - tRNA(Ile)-lysidine synthetase (EC 6.3.4.19), at 47,768 to 48,718 _50 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 45.565 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.571 kb on - strandat 45.571 kb on - strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.694 kb on + strandat 45.695 kb on - strandat 45.695 kb on - strandat 45.720 kb on + strandat 45.721 kb on - strandat 45.721 kb on - strandat 45.721 kb on - strandat 46.045 kb on + strand, within Ac3H11_49at 46.045 kb on + strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.053 kb on - strand, within Ac3H11_49at 46.053 kb on - strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.112 kb on + strand, within Ac3H11_49at 46.113 kb on - strand, within Ac3H11_49at 46.113 kb on - strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.137 kb on - strand, within Ac3H11_49at 46.181 kb on + strand, within Ac3H11_49at 46.182 kb on - strand, within Ac3H11_49at 46.249 kb on + strand, within Ac3H11_49at 46.250 kb on - strand, within Ac3H11_49at 46.250 kb on - strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.576 kb on + strand, within Ac3H11_49at 46.576 kb on + strand, within Ac3H11_49at 46.577 kb on - strand, within Ac3H11_49at 46.577 kb on - strand, within Ac3H11_49at 46.624 kb on - strand, within Ac3H11_49at 46.666 kb on + strand, within Ac3H11_49at 46.666 kb on + strand, within Ac3H11_49at 46.667 kb on - strand, within Ac3H11_49

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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45,565 + -0.0
45,570 + -0.1
45,570 + +0.4
45,570 + -0.2
45,570 + +1.0
45,570 + -0.6
45,570 + -1.3
45,571 - +0.9
45,571 - +1.0
45,649 + -0.4
45,649 + -1.3
45,649 + +0.5
45,649 + -0.8
45,649 + -0.6
45,649 + -0.4
45,649 + +0.1
45,649 + +0.4
45,649 + -0.1
45,649 + -1.3
45,649 + +0.5
45,649 + +1.8
45,650 - +1.1
45,650 - -0.4
45,650 - +0.2
45,650 - +0.2
45,650 - +1.0
45,694 + +1.4
45,695 - -0.3
45,695 - +0.2
45,720 + +1.4
45,721 - +0.4
45,721 - +0.2
45,721 - -0.2
46,045 + Ac3H11_49 0.15 -1.4
46,045 + Ac3H11_49 0.15 -0.2
46,046 - Ac3H11_49 0.15 +1.0
46,046 - Ac3H11_49 0.15 -2.2
46,046 - Ac3H11_49 0.15 +0.0
46,052 + Ac3H11_49 0.16 -0.5
46,052 + Ac3H11_49 0.16 +0.7
46,052 + Ac3H11_49 0.16 +0.3
46,052 + Ac3H11_49 0.16 -0.1
46,053 - Ac3H11_49 0.16 +0.2
46,053 - Ac3H11_49 0.16 -1.2
46,076 + Ac3H11_49 0.17 -0.2
46,076 + Ac3H11_49 0.17 -0.2
46,076 + Ac3H11_49 0.17 -0.3
46,076 + Ac3H11_49 0.17 -0.8
46,076 + Ac3H11_49 0.17 +0.4
46,076 + Ac3H11_49 0.17 +0.0
46,076 + Ac3H11_49 0.17 +2.2
46,076 + Ac3H11_49 0.17 +0.1
46,076 + Ac3H11_49 0.17 -0.4
46,076 + Ac3H11_49 0.17 -0.5
46,076 + Ac3H11_49 0.17 -0.1
46,077 - Ac3H11_49 0.17 -0.9
46,077 - Ac3H11_49 0.17 +0.2
46,077 - Ac3H11_49 0.17 -1.1
46,077 - Ac3H11_49 0.17 -0.2
46,077 - Ac3H11_49 0.17 -2.6
46,077 - Ac3H11_49 0.17 -0.1
46,112 + Ac3H11_49 0.19 -0.2
46,113 - Ac3H11_49 0.19 +0.5
46,113 - Ac3H11_49 0.19 -0.8
46,136 + Ac3H11_49 0.20 +0.3
46,136 + Ac3H11_49 0.20 +0.2
46,136 + Ac3H11_49 0.20 -0.3
46,136 + Ac3H11_49 0.20 +0.4
46,136 + Ac3H11_49 0.20 -0.9
46,136 + Ac3H11_49 0.20 +0.7
46,137 - Ac3H11_49 0.20 +0.4
46,181 + Ac3H11_49 0.23 -1.0
46,182 - Ac3H11_49 0.23 +0.2
46,249 + Ac3H11_49 0.26 +0.3
46,250 - Ac3H11_49 0.26 +0.9
46,250 - Ac3H11_49 0.26 -0.6
46,459 + Ac3H11_49 0.38 -0.8
46,459 + Ac3H11_49 0.38 -1.1
46,459 + Ac3H11_49 0.38 -2.1
46,459 + Ac3H11_49 0.38 +2.0
46,459 + Ac3H11_49 0.38 +0.5
46,459 + Ac3H11_49 0.38 -0.1
46,459 + Ac3H11_49 0.38 -1.5
46,459 + Ac3H11_49 0.38 -1.8
46,459 + Ac3H11_49 0.38 -1.6
46,459 + Ac3H11_49 0.38 -0.1
46,459 + Ac3H11_49 0.38 -1.1
46,459 + Ac3H11_49 0.38 +0.3
46,460 - Ac3H11_49 0.38 -0.5
46,460 - Ac3H11_49 0.38 -0.6
46,460 - Ac3H11_49 0.38 +1.1
46,460 - Ac3H11_49 0.38 -0.3
46,460 - Ac3H11_49 0.38 -0.0
46,460 - Ac3H11_49 0.38 -0.7
46,460 - Ac3H11_49 0.38 +0.4
46,460 - Ac3H11_49 0.38 -2.2
46,460 - Ac3H11_49 0.38 -0.1
46,460 - Ac3H11_49 0.38 +1.2
46,460 - Ac3H11_49 0.38 -0.0
46,576 + Ac3H11_49 0.44 +0.6
46,576 + Ac3H11_49 0.44 +4.0
46,577 - Ac3H11_49 0.44 +0.2
46,577 - Ac3H11_49 0.44 +1.8
46,624 - Ac3H11_49 0.46 -0.7
46,666 + Ac3H11_49 0.49 -0.5
46,666 + Ac3H11_49 0.49 +0.8
46,667 - Ac3H11_49 0.49 +0.5

Or see this region's nucleotide sequence