Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4870

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4867 and Ac3H11_4868 overlap by 48 nucleotidesAc3H11_4868 and Ac3H11_4869 are separated by 34 nucleotidesAc3H11_4869 and Ac3H11_4870 are separated by 113 nucleotidesAc3H11_4870 and Ac3H11_4871 overlap by 4 nucleotides Ac3H11_4867 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 27,725 to 29,857 _4867 Ac3H11_4868 - hypothetical protein, at 29,810 to 29,950 _4868 Ac3H11_4869 - hypothetical protein, at 29,985 to 30,506 _4869 Ac3H11_4870 - glycoside hydrolase, family 6, at 30,620 to 31,732 _4870 Ac3H11_4871 - hypothetical protein, at 31,729 to 33,435 _4871 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2 3at 29.643 kb on + strand, within Ac3H11_4867at 29.643 kb on + strand, within Ac3H11_4867at 29.644 kb on - strandat 29.644 kb on - strandat 29.706 kb on + strandat 29.706 kb on + strandat 29.706 kb on + strandat 29.707 kb on - strandat 29.707 kb on - strandat 29.707 kb on - strandat 29.707 kb on - strandat 29.707 kb on - strandat 29.772 kb on + strandat 29.772 kb on + strandat 29.772 kb on + strandat 29.772 kb on + strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.773 kb on - strandat 29.845 kb on + strandat 29.845 kb on + strandat 29.845 kb on + strandat 29.845 kb on + strandat 29.846 kb on - strandat 29.846 kb on - strandat 29.949 kb on - strandat 29.952 kb on + strandat 29.953 kb on - strandat 29.983 kb on + strandat 29.990 kb on + strandat 29.990 kb on + strandat 29.990 kb on + strandat 29.991 kb on - strandat 29.991 kb on - strandat 30.051 kb on + strand, within Ac3H11_4869at 30.051 kb on + strand, within Ac3H11_4869at 30.052 kb on - strand, within Ac3H11_4869at 30.052 kb on - strand, within Ac3H11_4869at 30.602 kb on + strandat 30.603 kb on - strandat 30.627 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.677 kb on + strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.678 kb on - strandat 30.776 kb on + strand, within Ac3H11_4870at 30.776 kb on + strand, within Ac3H11_4870at 30.886 kb on + strand, within Ac3H11_4870at 30.886 kb on + strand, within Ac3H11_4870at 30.887 kb on - strand, within Ac3H11_4870at 30.887 kb on - strand, within Ac3H11_4870at 30.887 kb on - strand, within Ac3H11_4870at 30.890 kb on + strand, within Ac3H11_4870at 30.890 kb on + strand, within Ac3H11_4870at 30.891 kb on - strand, within Ac3H11_4870at 30.891 kb on - strand, within Ac3H11_4870at 30.914 kb on + strand, within Ac3H11_4870at 30.915 kb on - strand, within Ac3H11_4870at 30.995 kb on + strand, within Ac3H11_4870at 31.325 kb on + strand, within Ac3H11_4870at 31.325 kb on + strand, within Ac3H11_4870at 31.325 kb on + strand, within Ac3H11_4870at 31.326 kb on - strand, within Ac3H11_4870at 31.326 kb on - strand, within Ac3H11_4870at 31.539 kb on - strand, within Ac3H11_4870at 31.622 kb on + strandat 31.623 kb on - strandat 31.623 kb on - strandat 31.844 kb on + strandat 31.845 kb on - strandat 31.845 kb on - strandat 31.845 kb on - strandat 31.850 kb on + strandat 31.850 kb on + strandat 31.850 kb on + strandat 31.850 kb on + strandat 31.850 kb on + strandat 31.850 kb on + strandat 31.851 kb on - strandat 31.851 kb on - strandat 31.851 kb on - strandat 32.028 kb on + strand, within Ac3H11_4871at 32.248 kb on + strand, within Ac3H11_4871at 32.257 kb on + strand, within Ac3H11_4871at 32.257 kb on + strand, within Ac3H11_4871at 32.257 kb on + strand, within Ac3H11_4871at 32.258 kb on - strand, within Ac3H11_4871at 32.332 kb on + strand, within Ac3H11_4871at 32.332 kb on + strand, within Ac3H11_4871at 32.332 kb on + strand, within Ac3H11_4871at 32.332 kb on + strand, within Ac3H11_4871at 32.332 kb on + strand, within Ac3H11_4871at 32.333 kb on - strand, within Ac3H11_4871at 32.333 kb on - strand, within Ac3H11_4871at 32.333 kb on - strand, within Ac3H11_4871at 32.333 kb on - strand, within Ac3H11_4871at 32.333 kb on - strand, within Ac3H11_4871at 32.414 kb on - strand, within Ac3H11_4871at 32.414 kb on - strand, within Ac3H11_4871at 32.414 kb on - strand, within Ac3H11_4871at 32.613 kb on + strand, within Ac3H11_4871at 32.613 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.635 kb on + strand, within Ac3H11_4871at 32.636 kb on - strand, within Ac3H11_4871at 32.636 kb on - strand, within Ac3H11_4871at 32.686 kb on + strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.687 kb on - strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.692 kb on + strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871at 32.693 kb on - strand, within Ac3H11_4871

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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29,643 + Ac3H11_4867 0.90 +0.4
29,643 + Ac3H11_4867 0.90 -0.4
29,644 - +0.1
29,644 - -0.0
29,706 + -1.4
29,706 + +0.0
29,706 + +1.8
29,707 - -2.1
29,707 - -1.8
29,707 - +0.5
29,707 - +0.9
29,707 - -1.0
29,772 + +0.3
29,772 + -1.6
29,772 + -0.3
29,772 + -0.5
29,773 - -0.5
29,773 - +0.5
29,773 - -0.1
29,773 - -1.5
29,773 - +0.2
29,773 - -0.6
29,773 - -0.8
29,845 + -0.6
29,845 + -0.2
29,845 + -0.2
29,845 + +1.4
29,846 - +0.0
29,846 - +0.8
29,949 - +0.9
29,952 + -0.0
29,953 - +0.8
29,983 + -0.4
29,990 + -2.3
29,990 + -2.0
29,990 + -0.2
29,991 - -0.1
29,991 - +0.3
30,051 + Ac3H11_4869 0.13 +0.4
30,051 + Ac3H11_4869 0.13 +0.3
30,052 - Ac3H11_4869 0.13 -1.7
30,052 - Ac3H11_4869 0.13 -0.3
30,602 + -0.6
30,603 - -0.0
30,627 + -0.3
30,677 + +0.0
30,677 + -0.7
30,677 + -1.0
30,677 + -0.8
30,677 + -0.6
30,677 + +1.5
30,677 + +0.3
30,678 - +0.7
30,678 - +1.0
30,678 - -1.1
30,678 - -0.1
30,678 - -0.0
30,678 - -0.5
30,678 - +0.4
30,776 + Ac3H11_4870 0.14 +0.3
30,776 + Ac3H11_4870 0.14 +0.8
30,886 + Ac3H11_4870 0.24 +0.5
30,886 + Ac3H11_4870 0.24 +0.6
30,887 - Ac3H11_4870 0.24 -0.4
30,887 - Ac3H11_4870 0.24 -1.4
30,887 - Ac3H11_4870 0.24 +0.2
30,890 + Ac3H11_4870 0.24 -0.3
30,890 + Ac3H11_4870 0.24 +0.1
30,891 - Ac3H11_4870 0.24 -1.0
30,891 - Ac3H11_4870 0.24 +1.8
30,914 + Ac3H11_4870 0.26 -0.1
30,915 - Ac3H11_4870 0.27 +0.7
30,995 + Ac3H11_4870 0.34 -0.1
31,325 + Ac3H11_4870 0.63 +1.0
31,325 + Ac3H11_4870 0.63 +0.1
31,325 + Ac3H11_4870 0.63 -0.8
31,326 - Ac3H11_4870 0.63 -0.3
31,326 - Ac3H11_4870 0.63 -2.1
31,539 - Ac3H11_4870 0.83 +2.2
31,622 + +0.9
31,623 - +3.0
31,623 - +0.4
31,844 + +0.8
31,845 - -0.2
31,845 - +0.3
31,845 - -0.0
31,850 + -0.2
31,850 + -2.0
31,850 + -0.7
31,850 + -1.8
31,850 + +0.4
31,850 + -0.3
31,851 - -0.9
31,851 - -0.3
31,851 - +0.4
32,028 + Ac3H11_4871 0.18 -0.0
32,248 + Ac3H11_4871 0.30 -1.3
32,257 + Ac3H11_4871 0.31 +0.6
32,257 + Ac3H11_4871 0.31 -0.4
32,257 + Ac3H11_4871 0.31 +0.5
32,258 - Ac3H11_4871 0.31 -0.2
32,332 + Ac3H11_4871 0.35 -0.8
32,332 + Ac3H11_4871 0.35 -1.3
32,332 + Ac3H11_4871 0.35 +0.6
32,332 + Ac3H11_4871 0.35 +0.3
32,332 + Ac3H11_4871 0.35 +1.6
32,333 - Ac3H11_4871 0.35 -1.0
32,333 - Ac3H11_4871 0.35 -0.3
32,333 - Ac3H11_4871 0.35 -0.3
32,333 - Ac3H11_4871 0.35 +2.0
32,333 - Ac3H11_4871 0.35 -0.6
32,414 - Ac3H11_4871 0.40 +0.4
32,414 - Ac3H11_4871 0.40 -1.5
32,414 - Ac3H11_4871 0.40 +0.5
32,613 + Ac3H11_4871 0.52 -1.6
32,613 + Ac3H11_4871 0.52 -0.9
32,635 + Ac3H11_4871 0.53 -0.3
32,635 + Ac3H11_4871 0.53 +0.7
32,635 + Ac3H11_4871 0.53 +0.2
32,636 - Ac3H11_4871 0.53 -2.0
32,636 - Ac3H11_4871 0.53 -0.9
32,686 + Ac3H11_4871 0.56 -1.5
32,687 - Ac3H11_4871 0.56 +0.0
32,687 - Ac3H11_4871 0.56 -0.0
32,687 - Ac3H11_4871 0.56 +0.8
32,687 - Ac3H11_4871 0.56 -1.9
32,687 - Ac3H11_4871 0.56 -1.6
32,687 - Ac3H11_4871 0.56 +0.9
32,692 + Ac3H11_4871 0.56 -0.3
32,692 + Ac3H11_4871 0.56 +2.1
32,692 + Ac3H11_4871 0.56 +0.2
32,693 - Ac3H11_4871 0.56 +0.1
32,693 - Ac3H11_4871 0.56 +0.1
32,693 - Ac3H11_4871 0.56 -0.4

Or see this region's nucleotide sequence