Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4575

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4573 and Ac3H11_4574 are separated by 100 nucleotidesAc3H11_4574 and Ac3H11_4575 are separated by 5 nucleotidesAc3H11_4575 and Ac3H11_4576 are separated by 433 nucleotidesAc3H11_4576 and Ac3H11_4577 are separated by 221 nucleotides Ac3H11_4573 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 169,634 to 172,930 _4573 Ac3H11_4574 - hypothetical protein, at 173,031 to 173,426 _4574 Ac3H11_4575 - Permease of the drug/metabolite transporter (DMT) superfamily, at 173,432 to 174,628 _4575 Ac3H11_4576 - hypothetical protein, at 175,062 to 175,379 _4576 Ac3H11_4577 - Superoxide dismutase SodM-like protein ChrF, at 175,601 to 175,915 _4577 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.601 kb on + strandat 172.750 kb on + strandat 172.912 kb on - strandat 172.912 kb on - strandat 172.912 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.947 kb on - strandat 172.968 kb on - strandat 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.212 kb on - strand, within Ac3H11_4574at 173.408 kb on - strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.424 kb on + strandat 173.425 kb on - strandat 173.425 kb on - strandat 173.425 kb on - strandat 173.573 kb on + strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.574 kb on - strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.688 kb on + strand, within Ac3H11_4575at 173.689 kb on - strand, within Ac3H11_4575at 173.689 kb on - strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.795 kb on + strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.796 kb on - strand, within Ac3H11_4575at 173.797 kb on + strand, within Ac3H11_4575at 173.994 kb on + strand, within Ac3H11_4575at 173.994 kb on + strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.082 kb on - strand, within Ac3H11_4575at 174.514 kb on + strandat 174.514 kb on + strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.515 kb on - strandat 174.551 kb on - strandat 174.743 kb on + strandat 174.744 kb on - strandat 174.744 kb on - strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.965 kb on + strandat 174.966 kb on - strandat 174.966 kb on - strandat 174.999 kb on + strandat 174.999 kb on + strandat 175.044 kb on - strandat 175.097 kb on - strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.276 kb on + strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strandat 175.277 kb on - strand, within Ac3H11_4576at 175.277 kb on - strand, within Ac3H11_4576at 175.424 kb on + strandat 175.424 kb on + strandat 175.425 kb on - strandat 175.425 kb on - strandat 175.425 kb on - strandat 175.445 kb on + strandat 175.446 kb on - strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.497 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.507 kb on + strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.508 kb on - strandat 175.530 kb on + strandat 175.531 kb on - strandat 175.531 kb on - strandat 175.550 kb on + strandat 175.550 kb on + strandat 175.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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172,601 + +0.5
172,601 + -0.3
172,601 + -0.1
172,601 + -1.6
172,601 + +1.1
172,601 + +1.7
172,750 + +0.5
172,912 - -0.1
172,912 - -0.4
172,912 - -1.2
172,947 - +0.5
172,947 - -1.4
172,947 - -1.9
172,947 - +2.4
172,968 - -0.8
173,212 - Ac3H11_4574 0.46 +1.3
173,212 - Ac3H11_4574 0.46 -3.4
173,212 - Ac3H11_4574 0.46 -2.3
173,212 - Ac3H11_4574 0.46 +0.4
173,212 - Ac3H11_4574 0.46 -1.1
173,212 - Ac3H11_4574 0.46 -0.3
173,408 - +0.6
173,424 + +0.1
173,424 + -0.1
173,424 + -0.0
173,424 + -1.0
173,424 + +0.2
173,424 + -0.9
173,425 - -0.4
173,425 - -0.2
173,425 - -0.1
173,573 + Ac3H11_4575 0.12 -1.3
173,574 - Ac3H11_4575 0.12 +0.4
173,574 - Ac3H11_4575 0.12 -0.5
173,574 - Ac3H11_4575 0.12 +0.3
173,574 - Ac3H11_4575 0.12 -0.1
173,574 - Ac3H11_4575 0.12 -0.1
173,688 + Ac3H11_4575 0.21 -1.5
173,688 + Ac3H11_4575 0.21 -0.5
173,688 + Ac3H11_4575 0.21 -0.8
173,689 - Ac3H11_4575 0.21 -1.1
173,689 - Ac3H11_4575 0.21 -1.6
173,795 + Ac3H11_4575 0.30 +0.0
173,795 + Ac3H11_4575 0.30 -0.3
173,795 + Ac3H11_4575 0.30 +0.1
173,795 + Ac3H11_4575 0.30 -1.6
173,795 + Ac3H11_4575 0.30 +0.4
173,796 - Ac3H11_4575 0.30 +0.5
173,796 - Ac3H11_4575 0.30 -0.2
173,796 - Ac3H11_4575 0.30 -0.9
173,796 - Ac3H11_4575 0.30 -0.9
173,796 - Ac3H11_4575 0.30 -2.6
173,796 - Ac3H11_4575 0.30 +0.5
173,796 - Ac3H11_4575 0.30 -0.4
173,796 - Ac3H11_4575 0.30 -0.6
173,796 - Ac3H11_4575 0.30 +0.8
173,796 - Ac3H11_4575 0.30 -0.7
173,796 - Ac3H11_4575 0.30 +0.4
173,797 + Ac3H11_4575 0.30 -0.5
173,994 + Ac3H11_4575 0.47 -0.6
173,994 + Ac3H11_4575 0.47 -2.2
174,082 - Ac3H11_4575 0.54 +0.4
174,082 - Ac3H11_4575 0.54 +0.9
174,082 - Ac3H11_4575 0.54 +0.2
174,514 + +0.0
174,514 + -0.4
174,515 - -0.3
174,515 - -0.7
174,515 - +0.6
174,515 - -0.5
174,551 - +0.4
174,743 + +0.1
174,744 - -0.4
174,744 - +0.6
174,965 + -1.0
174,965 + -2.1
174,965 + +0.6
174,965 + -0.4
174,966 - -2.5
174,966 - -0.2
174,999 + -1.7
174,999 + -0.3
175,044 - +0.6
175,097 - Ac3H11_4576 0.11 -0.3
175,276 + Ac3H11_4576 0.67 -1.4
175,276 + Ac3H11_4576 0.67 +0.6
175,276 + Ac3H11_4576 0.67 +0.1
175,276 + Ac3H11_4576 0.67 +0.6
175,276 + Ac3H11_4576 0.67 -0.8
175,276 + Ac3H11_4576 0.67 -0.2
175,276 + Ac3H11_4576 0.67 +0.1
175,277 - Ac3H11_4576 0.68 -0.6
175,277 - Ac3H11_4576 0.68 +0.1
175,277 - Ac3H11_4576 0.68 +1.4
175,277 - -0.2
175,277 - Ac3H11_4576 0.68 -0.3
175,277 - Ac3H11_4576 0.68 +0.7
175,424 + +1.7
175,424 + -1.0
175,425 - -0.8
175,425 - -1.0
175,425 - +0.4
175,445 + -0.5
175,446 - +1.1
175,469 - +0.0
175,469 - +0.7
175,497 + +0.2
175,507 + +0.6
175,507 + -0.9
175,507 + -1.3
175,507 + -0.3
175,507 + +0.4
175,507 + -0.4
175,508 - -0.9
175,508 - -0.7
175,508 - -0.5
175,508 - +0.1
175,530 + -0.4
175,531 - -0.4
175,531 - +0.3
175,550 + -0.3
175,550 + +1.1
175,551 - +1.2

Or see this region's nucleotide sequence