Experiment: Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2838 and Ac3H11_2839 are separated by 218 nucleotides Ac3H11_2839 and Ac3H11_2840 are separated by 98 nucleotides Ac3H11_2840 and Ac3H11_2841 are separated by 41 nucleotides Ac3H11_2841 and Ac3H11_2842 are separated by 3 nucleotides
Ac3H11_2838 - L-lactate dehydrogenase (EC 1.1.2.3), at 1,145,543 to 1,146,688
_2838
Ac3H11_2839 - FOG: HEAT repeat, at 1,146,907 to 1,147,116
_2839
Ac3H11_2840 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,147,215 to 1,147,901
_2840
Ac3H11_2841 - MotA/TolQ/ExbB proton channel family protein, at 1,147,943 to 1,148,662
_2841
Ac3H11_2842 - Biopolymer transport protein ExbD/TolR, at 1,148,666 to 1,149,073
_2842
Position (kb)
1147
1148 Strain fitness (log2 ratio)
-1
0
1
2 at 1146.799 kb on + strand at 1147.156 kb on - strand at 1147.169 kb on + strand at 1147.187 kb on + strand at 1147.214 kb on + strand at 1147.214 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.661 kb on - strand at 1148.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM remove 1,146,799 + -0.1 1,147,156 - -0.5 1,147,169 + +0.2 1,147,187 + +0.1 1,147,214 + +2.2 1,147,214 + +0.4 1,148,660 + +0.4 1,148,660 + +0.5 1,148,660 + +0.2 1,148,660 + +0.5 1,148,660 + +1.4 1,148,660 + -0.9 1,148,660 + +0.2 1,148,660 + +1.0 1,148,660 + +1.5 1,148,661 - -0.8 1,148,661 - -0.3
Or see this region's nucleotide sequence