Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2387

Experiment: Nickel (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2385 and Ac3H11_2386 are separated by 48 nucleotidesAc3H11_2386 and Ac3H11_2387 overlap by 4 nucleotidesAc3H11_2387 and Ac3H11_2388 are separated by 210 nucleotides Ac3H11_2385 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 644,891 to 646,003 _2385 Ac3H11_2386 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 646,052 to 646,234 _2386 Ac3H11_2387 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 646,231 to 647,049 _2387 Ac3H11_2388 - Adenylate kinase (EC 2.7.4.3), at 647,260 to 647,916 _2388 Position (kb) 646 647 648Strain fitness (log2 ratio) -2 -1 0 1at 646.109 kb on + strand, within Ac3H11_2386at 646.109 kb on + strand, within Ac3H11_2386at 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.148 kb on + strandat 647.148 kb on + strandat 647.148 kb on + strandat 647.149 kb on - strandat 647.196 kb on + strandat 647.242 kb on + strandat 647.928 kb on - strandat 647.939 kb on + strandat 647.939 kb on + strandat 647.970 kb on - strandat 648.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM
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646,109 + Ac3H11_2386 0.31 +0.5
646,109 + Ac3H11_2386 0.31 -0.4
647,110 + -0.5
647,110 + -1.3
647,110 + -0.6
647,110 + -0.4
647,110 + +0.8
647,110 + -1.9
647,110 + -1.1
647,111 - +1.1
647,111 - -0.4
647,111 - -2.1
647,111 - +1.5
647,111 - +0.8
647,122 + -0.4
647,122 + -1.3
647,122 + +0.5
647,122 + +0.8
647,122 + -2.5
647,122 + +1.6
647,122 + +0.3
647,122 + +1.1
647,123 - +0.5
647,123 - +1.0
647,123 - -0.5
647,123 - -0.6
647,123 - +1.4
647,148 + -0.9
647,148 + -0.5
647,148 + -0.9
647,149 - -2.0
647,196 + -0.5
647,242 + -1.3
647,928 - +0.6
647,939 + -1.9
647,939 + -0.4
647,970 - -0.5
648,009 + -0.3

Or see this region's nucleotide sequence