Experiment: Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1935 and Ac3H11_1936 are separated by 7 nucleotides Ac3H11_1936 and Ac3H11_1937 overlap by 4 nucleotides Ac3H11_1937 and Ac3H11_1938 overlap by 4 nucleotides
Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209
_1935
Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035
_1936
Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871
_1937
Ac3H11_1938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 153,868 to 154,944
_1938
Position (kb) 153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.182 kb on + strand at 152.209 kb on + strand at 152.210 kb on - strand at 152.285 kb on - strand at 152.362 kb on + strand, within Ac3H11_1936 at 152.362 kb on + strand, within Ac3H11_1936 at 152.362 kb on + strand, within Ac3H11_1936 at 152.363 kb on - strand, within Ac3H11_1936 at 152.369 kb on - strand, within Ac3H11_1936 at 152.369 kb on - strand, within Ac3H11_1936 at 152.577 kb on + strand, within Ac3H11_1936 at 152.578 kb on - strand, within Ac3H11_1936 at 152.621 kb on - strand, within Ac3H11_1936 at 152.674 kb on + strand, within Ac3H11_1936 at 152.675 kb on - strand, within Ac3H11_1936 at 152.675 kb on - strand, within Ac3H11_1936 at 152.675 kb on - strand, within Ac3H11_1936 at 152.997 kb on + strand at 153.102 kb on + strand at 153.102 kb on + strand at 153.418 kb on - strand, within Ac3H11_1937 at 153.678 kb on + strand, within Ac3H11_1937 at 153.705 kb on + strand, within Ac3H11_1937 at 153.705 kb on + strand, within Ac3H11_1937 at 153.706 kb on - strand, within Ac3H11_1937 at 153.706 kb on - strand, within Ac3H11_1937 at 154.022 kb on + strand, within Ac3H11_1938 at 154.023 kb on - strand, within Ac3H11_1938 at 154.023 kb on - strand, within Ac3H11_1938 at 154.023 kb on - strand, within Ac3H11_1938 at 154.023 kb on - strand, within Ac3H11_1938 at 154.236 kb on - strand, within Ac3H11_1938 at 154.236 kb on - strand, within Ac3H11_1938 at 154.430 kb on + strand, within Ac3H11_1938 at 154.430 kb on + strand, within Ac3H11_1938 at 154.431 kb on - strand, within Ac3H11_1938 at 154.574 kb on + strand, within Ac3H11_1938 at 154.574 kb on + strand, within Ac3H11_1938 at 154.575 kb on - strand, within Ac3H11_1938 at 154.575 kb on - strand, within Ac3H11_1938 at 154.575 kb on - strand, within Ac3H11_1938 at 154.697 kb on + strand, within Ac3H11_1938 at 154.697 kb on + strand, within Ac3H11_1938 at 154.697 kb on + strand, within Ac3H11_1938 at 154.697 kb on + strand, within Ac3H11_1938 at 154.698 kb on - strand, within Ac3H11_1938 at 154.698 kb on - strand, within Ac3H11_1938 at 154.698 kb on - strand, within Ac3H11_1938 at 154.787 kb on + strand, within Ac3H11_1938 at 154.788 kb on - strand, within Ac3H11_1938 at 154.821 kb on - strand, within Ac3H11_1938 at 154.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM remove 152,182 + -0.4 152,209 + +1.0 152,210 - +0.9 152,285 - -0.2 152,362 + Ac3H11_1936 0.18 +2.2 152,362 + Ac3H11_1936 0.18 +0.8 152,362 + Ac3H11_1936 0.18 -1.0 152,363 - Ac3H11_1936 0.18 +0.1 152,369 - Ac3H11_1936 0.19 -0.6 152,369 - Ac3H11_1936 0.19 +1.0 152,577 + Ac3H11_1936 0.44 +0.1 152,578 - Ac3H11_1936 0.44 +0.8 152,621 - Ac3H11_1936 0.49 -0.3 152,674 + Ac3H11_1936 0.56 +0.9 152,675 - Ac3H11_1936 0.56 +0.2 152,675 - Ac3H11_1936 0.56 +0.2 152,675 - Ac3H11_1936 0.56 +0.5 152,997 + +0.2 153,102 + -1.2 153,102 + +0.4 153,418 - Ac3H11_1937 0.46 -0.2 153,678 + Ac3H11_1937 0.77 +0.4 153,705 + Ac3H11_1937 0.80 +1.9 153,705 + Ac3H11_1937 0.80 +0.4 153,706 - Ac3H11_1937 0.80 +0.4 153,706 - Ac3H11_1937 0.80 +0.9 154,022 + Ac3H11_1938 0.14 +0.2 154,023 - Ac3H11_1938 0.14 -0.5 154,023 - Ac3H11_1938 0.14 -1.5 154,023 - Ac3H11_1938 0.14 +0.5 154,023 - Ac3H11_1938 0.14 +0.1 154,236 - Ac3H11_1938 0.34 -2.2 154,236 - Ac3H11_1938 0.34 -0.2 154,430 + Ac3H11_1938 0.52 -1.1 154,430 + Ac3H11_1938 0.52 -1.8 154,431 - Ac3H11_1938 0.52 -0.9 154,574 + Ac3H11_1938 0.66 +0.9 154,574 + Ac3H11_1938 0.66 -0.3 154,575 - Ac3H11_1938 0.66 -0.7 154,575 - Ac3H11_1938 0.66 +1.2 154,575 - Ac3H11_1938 0.66 +1.9 154,697 + Ac3H11_1938 0.77 -1.5 154,697 + Ac3H11_1938 0.77 -0.8 154,697 + Ac3H11_1938 0.77 +1.1 154,697 + Ac3H11_1938 0.77 -0.0 154,698 - Ac3H11_1938 0.77 -1.5 154,698 - Ac3H11_1938 0.77 -1.0 154,698 - Ac3H11_1938 0.77 +0.3 154,787 + Ac3H11_1938 0.85 -0.1 154,788 - Ac3H11_1938 0.85 +0.9 154,821 - Ac3H11_1938 0.88 -1.8 154,871 + +0.1
Or see this region's nucleotide sequence