Experiment: Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1820 and Ac3H11_1821 are separated by 49 nucleotides Ac3H11_1821 and Ac3H11_1822 are separated by 33 nucleotides Ac3H11_1822 and Ac3H11_1823 are separated by 12 nucleotides Ac3H11_1823 and Ac3H11_1824 are separated by 23 nucleotides
Ac3H11_1820 - COG1565: Uncharacterized conserved protein, at 24,479 to 25,597
_1820
Ac3H11_1821 - hypothetical protein, at 25,647 to 25,805
_1821
Ac3H11_1822 - Thioredoxin, at 25,839 to 26,306
_1822
Ac3H11_1823 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 26,319 to 26,792
_1823
Ac3H11_1824 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 26,816 to 27,577
_1824
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.645 kb on + strand at 25.645 kb on + strand at 25.646 kb on - strand at 25.646 kb on - strand at 25.803 kb on + strand at 25.803 kb on + strand at 25.803 kb on + strand at 25.804 kb on - strand at 25.980 kb on - strand, within Ac3H11_1822 at 26.187 kb on + strand, within Ac3H11_1822 at 26.187 kb on + strand, within Ac3H11_1822 at 26.187 kb on + strand, within Ac3H11_1822 at 26.187 kb on + strand, within Ac3H11_1822 at 26.187 kb on + strand, within Ac3H11_1822 at 26.304 kb on + strand at 26.305 kb on - strand at 26.377 kb on + strand, within Ac3H11_1823 at 26.377 kb on + strand, within Ac3H11_1823 at 26.377 kb on + strand, within Ac3H11_1823 at 26.378 kb on - strand, within Ac3H11_1823 at 26.378 kb on - strand, within Ac3H11_1823 at 26.378 kb on - strand, within Ac3H11_1823 at 26.425 kb on + strand, within Ac3H11_1823 at 26.575 kb on + strand, within Ac3H11_1823 at 26.575 kb on + strand, within Ac3H11_1823 at 26.575 kb on + strand, within Ac3H11_1823 at 26.575 kb on + strand, within Ac3H11_1823 at 26.575 kb on + strand, within Ac3H11_1823 at 26.576 kb on - strand, within Ac3H11_1823 at 26.596 kb on + strand, within Ac3H11_1823 at 26.596 kb on + strand, within Ac3H11_1823 at 26.596 kb on + strand, within Ac3H11_1823 at 26.597 kb on - strand, within Ac3H11_1823 at 27.267 kb on + strand, within Ac3H11_1824 at 27.267 kb on + strand, within Ac3H11_1824 at 27.267 kb on + strand, within Ac3H11_1824 at 27.268 kb on - strand, within Ac3H11_1824 at 27.268 kb on - strand, within Ac3H11_1824
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM remove 25,645 + -0.0 25,645 + +0.2 25,646 - -0.5 25,646 - +0.4 25,803 + +0.1 25,803 + +0.4 25,803 + +0.2 25,804 - -0.4 25,980 - Ac3H11_1822 0.30 -0.9 26,187 + Ac3H11_1822 0.74 -0.5 26,187 + Ac3H11_1822 0.74 +0.1 26,187 + Ac3H11_1822 0.74 -1.9 26,187 + Ac3H11_1822 0.74 +0.9 26,187 + Ac3H11_1822 0.74 +0.7 26,304 + -3.3 26,305 - +0.4 26,377 + Ac3H11_1823 0.12 +0.1 26,377 + Ac3H11_1823 0.12 +0.3 26,377 + Ac3H11_1823 0.12 -0.3 26,378 - Ac3H11_1823 0.12 +0.4 26,378 - Ac3H11_1823 0.12 +0.9 26,378 - Ac3H11_1823 0.12 -1.2 26,425 + Ac3H11_1823 0.22 +1.7 26,575 + Ac3H11_1823 0.54 -0.4 26,575 + Ac3H11_1823 0.54 +0.7 26,575 + Ac3H11_1823 0.54 -1.3 26,575 + Ac3H11_1823 0.54 -0.6 26,575 + Ac3H11_1823 0.54 +0.1 26,576 - Ac3H11_1823 0.54 +0.6 26,596 + Ac3H11_1823 0.58 -1.2 26,596 + Ac3H11_1823 0.58 -0.6 26,596 + Ac3H11_1823 0.58 -0.7 26,597 - Ac3H11_1823 0.59 -1.3 27,267 + Ac3H11_1824 0.59 -2.6 27,267 + Ac3H11_1824 0.59 +0.8 27,267 + Ac3H11_1824 0.59 -0.2 27,268 - Ac3H11_1824 0.59 +0.0 27,268 - Ac3H11_1824 0.59 -0.4
Or see this region's nucleotide sequence