Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27520

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27515 and AO353_27520 are separated by 217 nucleotidesAO353_27520 and AO353_27525 are separated by 160 nucleotides AO353_27515: AO353_27515 - radical SAM protein, at 6,004,307 to 6,005,770 _27515 AO353_27520: AO353_27520 - 3-demethylubiquinone-9 3-methyltransferase, at 6,005,988 to 6,006,401 _27520 AO353_27525: AO353_27525 - AraC family transcriptional regulator, at 6,006,562 to 6,007,584 _27525 Position (kb) 6005 6006 6007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6005.024 kb on - strand, within AO353_27515at 6005.030 kb on + strand, within AO353_27515at 6005.034 kb on - strand, within AO353_27515at 6005.042 kb on + strand, within AO353_27515at 6005.043 kb on - strand, within AO353_27515at 6005.043 kb on - strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.050 kb on + strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.051 kb on - strand, within AO353_27515at 6005.209 kb on + strand, within AO353_27515at 6005.219 kb on + strand, within AO353_27515at 6005.288 kb on + strand, within AO353_27515at 6005.289 kb on - strand, within AO353_27515at 6005.289 kb on - strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.291 kb on + strand, within AO353_27515at 6005.292 kb on - strand, within AO353_27515at 6005.292 kb on - strand, within AO353_27515at 6005.292 kb on - strand, within AO353_27515at 6005.292 kb on - strand, within AO353_27515at 6005.292 kb on - strand, within AO353_27515at 6005.317 kb on + strand, within AO353_27515at 6005.317 kb on + strand, within AO353_27515at 6005.338 kb on - strand, within AO353_27515at 6005.363 kb on + strand, within AO353_27515at 6005.581 kb on + strand, within AO353_27515at 6005.581 kb on + strand, within AO353_27515at 6005.581 kb on + strand, within AO353_27515at 6005.581 kb on + strand, within AO353_27515at 6005.581 kb on + strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.582 kb on - strand, within AO353_27515at 6005.621 kb on + strand, within AO353_27515at 6005.621 kb on + strandat 6005.622 kb on - strand, within AO353_27515at 6005.622 kb on - strand, within AO353_27515at 6005.622 kb on - strand, within AO353_27515at 6005.622 kb on - strand, within AO353_27515at 6005.725 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.768 kb on + strandat 6005.769 kb on - strandat 6005.769 kb on - strandat 6005.769 kb on - strandat 6005.769 kb on - strandat 6005.769 kb on - strandat 6005.783 kb on - strandat 6005.858 kb on - strandat 6005.881 kb on + strandat 6005.881 kb on + strandat 6005.881 kb on + strandat 6005.881 kb on + strandat 6005.882 kb on - strandat 6005.882 kb on - strandat 6005.882 kb on - strandat 6005.882 kb on - strandat 6005.882 kb on - strandat 6005.882 kb on - strandat 6005.885 kb on + strandat 6005.886 kb on - strandat 6005.953 kb on + strandat 6006.004 kb on - strandat 6006.004 kb on - strandat 6006.045 kb on + strand, within AO353_27520at 6006.045 kb on + strand, within AO353_27520at 6006.046 kb on - strand, within AO353_27520at 6006.046 kb on - strand, within AO353_27520at 6006.046 kb on - strand, within AO353_27520at 6006.046 kb on - strand, within AO353_27520at 6006.126 kb on - strand, within AO353_27520at 6006.399 kb on + strandat 6006.400 kb on - strandat 6006.400 kb on - strandat 6006.400 kb on - strandat 6006.400 kb on - strandat 6006.408 kb on - strandat 6006.434 kb on + strandat 6006.434 kb on + strandat 6006.434 kb on + strandat 6006.434 kb on + strandat 6006.434 kb on + strandat 6006.435 kb on - strandat 6006.435 kb on - strandat 6006.435 kb on - strandat 6006.556 kb on + strandat 6006.556 kb on + strandat 6006.556 kb on + strandat 6006.556 kb on + strandat 6006.556 kb on + strandat 6006.556 kb on + strandat 6006.736 kb on + strand, within AO353_27525at 6006.851 kb on + strand, within AO353_27525at 6006.852 kb on - strand, within AO353_27525at 6006.989 kb on + strand, within AO353_27525at 6006.990 kb on - strand, within AO353_27525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
6,005,024 - AO353_27515 0.49 -1.5
6,005,030 + AO353_27515 0.49 +1.2
6,005,034 - AO353_27515 0.50 -0.2
6,005,042 + AO353_27515 0.50 -2.9
6,005,043 - AO353_27515 0.50 +0.8
6,005,043 - AO353_27515 0.50 +1.6
6,005,050 + AO353_27515 0.51 -1.1
6,005,050 + AO353_27515 0.51 +0.1
6,005,050 + AO353_27515 0.51 -0.3
6,005,050 + AO353_27515 0.51 +1.1
6,005,050 + AO353_27515 0.51 -0.9
6,005,050 + AO353_27515 0.51 -1.0
6,005,050 + AO353_27515 0.51 +1.7
6,005,050 + AO353_27515 0.51 +0.5
6,005,050 + AO353_27515 0.51 -0.8
6,005,050 + AO353_27515 0.51 +0.2
6,005,050 + AO353_27515 0.51 +1.1
6,005,050 + AO353_27515 0.51 -0.7
6,005,050 + AO353_27515 0.51 -1.2
6,005,050 + AO353_27515 0.51 +0.8
6,005,050 + AO353_27515 0.51 -1.7
6,005,050 + AO353_27515 0.51 -0.5
6,005,050 + AO353_27515 0.51 +0.1
6,005,050 + AO353_27515 0.51 -0.5
6,005,051 - AO353_27515 0.51 +1.1
6,005,051 - AO353_27515 0.51 -0.6
6,005,051 - AO353_27515 0.51 +1.1
6,005,051 - AO353_27515 0.51 -0.8
6,005,051 - AO353_27515 0.51 +0.1
6,005,051 - AO353_27515 0.51 -0.7
6,005,051 - AO353_27515 0.51 +0.4
6,005,051 - AO353_27515 0.51 -0.2
6,005,051 - AO353_27515 0.51 +0.9
6,005,051 - AO353_27515 0.51 -0.2
6,005,051 - AO353_27515 0.51 -0.3
6,005,051 - AO353_27515 0.51 +1.1
6,005,209 + AO353_27515 0.62 -0.5
6,005,219 + AO353_27515 0.62 -0.5
6,005,288 + AO353_27515 0.67 -0.8
6,005,289 - AO353_27515 0.67 -0.9
6,005,289 - AO353_27515 0.67 -0.1
6,005,291 + AO353_27515 0.67 -0.6
6,005,291 + AO353_27515 0.67 +0.4
6,005,291 + AO353_27515 0.67 -0.3
6,005,291 + AO353_27515 0.67 +0.1
6,005,291 + AO353_27515 0.67 -0.9
6,005,291 + AO353_27515 0.67 +0.9
6,005,292 - AO353_27515 0.67 -1.0
6,005,292 - AO353_27515 0.67 +1.1
6,005,292 - AO353_27515 0.67 +1.1
6,005,292 - AO353_27515 0.67 +0.1
6,005,292 - AO353_27515 0.67 -0.1
6,005,317 + AO353_27515 0.69 +1.7
6,005,317 + AO353_27515 0.69 +0.5
6,005,338 - AO353_27515 0.70 -0.3
6,005,363 + AO353_27515 0.72 -0.3
6,005,581 + AO353_27515 0.87 +1.5
6,005,581 + AO353_27515 0.87 +0.6
6,005,581 + AO353_27515 0.87 +0.2
6,005,581 + AO353_27515 0.87 +0.7
6,005,581 + AO353_27515 0.87 +0.5
6,005,582 - AO353_27515 0.87 -1.9
6,005,582 - AO353_27515 0.87 -0.7
6,005,582 - AO353_27515 0.87 +1.1
6,005,582 - AO353_27515 0.87 +0.1
6,005,582 - AO353_27515 0.87 -1.0
6,005,582 - AO353_27515 0.87 +0.3
6,005,582 - AO353_27515 0.87 -0.9
6,005,582 - AO353_27515 0.87 +1.4
6,005,621 + AO353_27515 0.90 -0.4
6,005,621 + +1.1
6,005,622 - AO353_27515 0.90 -0.4
6,005,622 - AO353_27515 0.90 +0.5
6,005,622 - AO353_27515 0.90 -1.3
6,005,622 - AO353_27515 0.90 +0.0
6,005,725 + +0.1
6,005,768 + +0.3
6,005,768 + +1.9
6,005,768 + +0.7
6,005,768 + +1.7
6,005,768 + -0.9
6,005,768 + -0.1
6,005,768 + -0.5
6,005,769 - -0.5
6,005,769 - -0.4
6,005,769 - +0.3
6,005,769 - -1.6
6,005,769 - -0.2
6,005,783 - +0.8
6,005,858 - -0.3
6,005,881 + +0.3
6,005,881 + -0.2
6,005,881 + +1.5
6,005,881 + -0.5
6,005,882 - +0.0
6,005,882 - -0.2
6,005,882 - +0.1
6,005,882 - +0.2
6,005,882 - -0.8
6,005,882 - +0.1
6,005,885 + -2.1
6,005,886 - -0.0
6,005,953 + +0.6
6,006,004 - -0.0
6,006,004 - -2.1
6,006,045 + AO353_27520 0.14 +0.2
6,006,045 + AO353_27520 0.14 +0.5
6,006,046 - AO353_27520 0.14 +0.9
6,006,046 - AO353_27520 0.14 +0.7
6,006,046 - AO353_27520 0.14 -0.4
6,006,046 - AO353_27520 0.14 -1.1
6,006,126 - AO353_27520 0.33 +0.5
6,006,399 + -2.7
6,006,400 - -0.3
6,006,400 - -1.7
6,006,400 - +1.1
6,006,400 - -0.9
6,006,408 - +0.3
6,006,434 + -1.2
6,006,434 + +0.5
6,006,434 + -1.5
6,006,434 + -2.3
6,006,434 + +0.4
6,006,435 - +0.6
6,006,435 - +0.1
6,006,435 - +0.1
6,006,556 + +0.5
6,006,556 + -2.3
6,006,556 + +0.8
6,006,556 + +0.5
6,006,556 + -0.7
6,006,556 + -0.2
6,006,736 + AO353_27525 0.17 +0.1
6,006,851 + AO353_27525 0.28 -1.3
6,006,852 - AO353_27525 0.28 +0.1
6,006,989 + AO353_27525 0.42 +0.6
6,006,990 - AO353_27525 0.42 +0.7

Or see this region's nucleotide sequence