Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19715 and AO353_19720 overlap by 4 nucleotides AO353_19720 and AO353_19725 are separated by 298 nucleotides
AO353_19715: AO353_19715 - disulfide bond formation protein DsbA, at 4,328,188 to 4,329,777
_19715
AO353_19720: AO353_19720 - hemolysin D, at 4,329,774 to 4,330,901
_19720
AO353_19725: AO353_19725 - ShlB family hemolysin secretion/activation protein, at 4,331,200 to 4,332,927
_19725
Position (kb)
4329
4330
4331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4328.774 kb on + strand, within AO353_19715 at 4328.774 kb on + strand, within AO353_19715 at 4328.774 kb on + strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.775 kb on - strand, within AO353_19715 at 4328.879 kb on + strand, within AO353_19715 at 4328.879 kb on + strand, within AO353_19715 at 4328.880 kb on - strand, within AO353_19715 at 4328.880 kb on - strand, within AO353_19715 at 4329.092 kb on + strand, within AO353_19715 at 4329.092 kb on + strand, within AO353_19715 at 4329.092 kb on + strand, within AO353_19715 at 4329.092 kb on + strand, within AO353_19715 at 4329.093 kb on - strand, within AO353_19715 at 4329.093 kb on - strand, within AO353_19715 at 4329.093 kb on - strand, within AO353_19715 at 4329.137 kb on + strand, within AO353_19715 at 4329.233 kb on + strand, within AO353_19715 at 4329.233 kb on + strand, within AO353_19715 at 4329.234 kb on - strand, within AO353_19715 at 4329.234 kb on - strand, within AO353_19715 at 4329.575 kb on + strand, within AO353_19715 at 4329.575 kb on + strand, within AO353_19715 at 4329.576 kb on - strand, within AO353_19715 at 4329.576 kb on - strand, within AO353_19715 at 4329.831 kb on - strand at 4329.831 kb on - strand at 4329.864 kb on + strand at 4329.864 kb on + strand at 4329.864 kb on + strand at 4329.864 kb on + strand at 4329.864 kb on + strand at 4329.865 kb on - strand at 4329.865 kb on - strand at 4330.159 kb on + strand, within AO353_19720 at 4330.159 kb on + strand, within AO353_19720 at 4330.160 kb on - strand, within AO353_19720 at 4330.332 kb on + strand, within AO353_19720 at 4330.418 kb on + strand, within AO353_19720 at 4330.438 kb on + strand, within AO353_19720 at 4330.684 kb on + strand, within AO353_19720 at 4330.729 kb on + strand, within AO353_19720 at 4330.729 kb on + strand, within AO353_19720 at 4330.729 kb on + strand, within AO353_19720 at 4330.730 kb on - strand, within AO353_19720 at 4330.730 kb on - strand, within AO353_19720 at 4330.783 kb on + strand, within AO353_19720 at 4330.784 kb on - strand, within AO353_19720 at 4330.784 kb on - strand, within AO353_19720 at 4331.022 kb on - strand at 4331.022 kb on - strand at 4331.022 kb on - strand at 4331.079 kb on - strand at 4331.079 kb on - strand at 4331.079 kb on - strand at 4331.088 kb on + strand at 4331.088 kb on + strand at 4331.088 kb on + strand at 4331.088 kb on + strand at 4331.088 kb on + strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.092 kb on + strand at 4331.092 kb on + strand at 4331.092 kb on + strand at 4331.093 kb on - strand at 4331.095 kb on + strand at 4331.096 kb on - strand at 4331.096 kb on - strand at 4331.096 kb on - strand at 4331.099 kb on + strand at 4331.099 kb on + strand at 4331.099 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.106 kb on + strand at 4331.107 kb on - strand at 4331.107 kb on - strand at 4331.107 kb on - strand at 4331.143 kb on + strand at 4331.143 kb on + strand at 4331.143 kb on + strand at 4331.170 kb on - strand at 4331.170 kb on - strand at 4331.608 kb on + strand, within AO353_19725 at 4331.608 kb on + strand, within AO353_19725 at 4331.608 kb on + strand, within AO353_19725 at 4331.609 kb on - strand, within AO353_19725 at 4331.609 kb on - strand, within AO353_19725 at 4331.609 kb on - strand, within AO353_19725 at 4331.624 kb on - strand, within AO353_19725 at 4331.642 kb on - strand, within AO353_19725 at 4331.642 kb on - strand, within AO353_19725 at 4331.698 kb on + strand, within AO353_19725 at 4331.699 kb on - strand, within AO353_19725 at 4331.699 kb on - strand, within AO353_19725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,328,774 + AO353_19715 0.37 -0.3 4,328,774 + AO353_19715 0.37 +0.2 4,328,774 + AO353_19715 0.37 +0.5 4,328,775 - AO353_19715 0.37 +1.3 4,328,775 - AO353_19715 0.37 -0.2 4,328,775 - AO353_19715 0.37 -0.3 4,328,775 - AO353_19715 0.37 -1.0 4,328,775 - AO353_19715 0.37 +0.1 4,328,775 - AO353_19715 0.37 +0.4 4,328,879 + AO353_19715 0.43 -1.6 4,328,879 + AO353_19715 0.43 +1.2 4,328,880 - AO353_19715 0.44 +0.4 4,328,880 - AO353_19715 0.44 +0.3 4,329,092 + AO353_19715 0.57 +1.7 4,329,092 + AO353_19715 0.57 -0.8 4,329,092 + AO353_19715 0.57 -0.7 4,329,092 + AO353_19715 0.57 -0.3 4,329,093 - AO353_19715 0.57 +1.8 4,329,093 - AO353_19715 0.57 +0.3 4,329,093 - AO353_19715 0.57 +0.7 4,329,137 + AO353_19715 0.60 -0.2 4,329,233 + AO353_19715 0.66 -0.5 4,329,233 + AO353_19715 0.66 +0.6 4,329,234 - AO353_19715 0.66 +0.5 4,329,234 - AO353_19715 0.66 +0.1 4,329,575 + AO353_19715 0.87 +1.3 4,329,575 + AO353_19715 0.87 -0.3 4,329,576 - AO353_19715 0.87 +0.3 4,329,576 - AO353_19715 0.87 -0.3 4,329,831 - -0.9 4,329,831 - -0.9 4,329,864 + +0.3 4,329,864 + -0.0 4,329,864 + -0.6 4,329,864 + +1.3 4,329,864 + +1.3 4,329,865 - +0.3 4,329,865 - -0.3 4,330,159 + AO353_19720 0.34 -1.3 4,330,159 + AO353_19720 0.34 -2.0 4,330,160 - AO353_19720 0.34 +0.2 4,330,332 + AO353_19720 0.49 -0.9 4,330,418 + AO353_19720 0.57 +0.7 4,330,438 + AO353_19720 0.59 -0.7 4,330,684 + AO353_19720 0.81 +0.1 4,330,729 + AO353_19720 0.85 +1.7 4,330,729 + AO353_19720 0.85 -1.0 4,330,729 + AO353_19720 0.85 +1.1 4,330,730 - AO353_19720 0.85 +1.3 4,330,730 - AO353_19720 0.85 +1.3 4,330,783 + AO353_19720 0.89 +0.7 4,330,784 - AO353_19720 0.90 +0.9 4,330,784 - AO353_19720 0.90 +0.3 4,331,022 - -0.8 4,331,022 - -0.0 4,331,022 - +2.3 4,331,079 - -0.7 4,331,079 - -0.0 4,331,079 - +1.3 4,331,088 + +1.1 4,331,088 + -0.1 4,331,088 + +1.8 4,331,088 + -1.0 4,331,088 + +0.3 4,331,089 - +0.1 4,331,089 - -1.5 4,331,089 - -1.5 4,331,089 - +1.6 4,331,089 - -0.2 4,331,089 - +0.9 4,331,089 - +0.6 4,331,092 + +0.9 4,331,092 + +0.3 4,331,092 + -0.2 4,331,093 - -0.6 4,331,095 + -1.7 4,331,096 - +1.3 4,331,096 - +0.8 4,331,096 - +0.4 4,331,099 + +0.3 4,331,099 + -0.1 4,331,099 + +0.3 4,331,106 + -0.5 4,331,106 + -0.8 4,331,106 + -0.5 4,331,106 + -0.6 4,331,106 + -0.1 4,331,106 + +1.6 4,331,106 + -0.9 4,331,107 - -0.2 4,331,107 - +2.3 4,331,107 - -0.3 4,331,143 + +0.2 4,331,143 + -1.4 4,331,143 + -1.1 4,331,170 - -1.2 4,331,170 - +1.3 4,331,608 + AO353_19725 0.24 +0.0 4,331,608 + AO353_19725 0.24 +0.4 4,331,608 + AO353_19725 0.24 +0.3 4,331,609 - AO353_19725 0.24 -0.1 4,331,609 - AO353_19725 0.24 +0.6 4,331,609 - AO353_19725 0.24 -0.3 4,331,624 - AO353_19725 0.25 +0.3 4,331,642 - AO353_19725 0.26 +1.3 4,331,642 - AO353_19725 0.26 +0.1 4,331,698 + AO353_19725 0.29 +0.0 4,331,699 - AO353_19725 0.29 -0.9 4,331,699 - AO353_19725 0.29 +0.1
Or see this region's nucleotide sequence