Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19720

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19715 and AO353_19720 overlap by 4 nucleotidesAO353_19720 and AO353_19725 are separated by 298 nucleotides AO353_19715: AO353_19715 - disulfide bond formation protein DsbA, at 4,328,188 to 4,329,777 _19715 AO353_19720: AO353_19720 - hemolysin D, at 4,329,774 to 4,330,901 _19720 AO353_19725: AO353_19725 - ShlB family hemolysin secretion/activation protein, at 4,331,200 to 4,332,927 _19725 Position (kb) 4329 4330 4331Strain fitness (log2 ratio) -2 -1 0 1 2at 4328.774 kb on + strand, within AO353_19715at 4328.774 kb on + strand, within AO353_19715at 4328.774 kb on + strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.775 kb on - strand, within AO353_19715at 4328.879 kb on + strand, within AO353_19715at 4328.879 kb on + strand, within AO353_19715at 4328.880 kb on - strand, within AO353_19715at 4328.880 kb on - strand, within AO353_19715at 4329.092 kb on + strand, within AO353_19715at 4329.092 kb on + strand, within AO353_19715at 4329.092 kb on + strand, within AO353_19715at 4329.092 kb on + strand, within AO353_19715at 4329.093 kb on - strand, within AO353_19715at 4329.093 kb on - strand, within AO353_19715at 4329.093 kb on - strand, within AO353_19715at 4329.137 kb on + strand, within AO353_19715at 4329.233 kb on + strand, within AO353_19715at 4329.233 kb on + strand, within AO353_19715at 4329.234 kb on - strand, within AO353_19715at 4329.234 kb on - strand, within AO353_19715at 4329.575 kb on + strand, within AO353_19715at 4329.575 kb on + strand, within AO353_19715at 4329.576 kb on - strand, within AO353_19715at 4329.576 kb on - strand, within AO353_19715at 4329.831 kb on - strandat 4329.831 kb on - strandat 4329.864 kb on + strandat 4329.864 kb on + strandat 4329.864 kb on + strandat 4329.864 kb on + strandat 4329.864 kb on + strandat 4329.865 kb on - strandat 4329.865 kb on - strandat 4330.159 kb on + strand, within AO353_19720at 4330.159 kb on + strand, within AO353_19720at 4330.160 kb on - strand, within AO353_19720at 4330.332 kb on + strand, within AO353_19720at 4330.418 kb on + strand, within AO353_19720at 4330.438 kb on + strand, within AO353_19720at 4330.684 kb on + strand, within AO353_19720at 4330.729 kb on + strand, within AO353_19720at 4330.729 kb on + strand, within AO353_19720at 4330.729 kb on + strand, within AO353_19720at 4330.730 kb on - strand, within AO353_19720at 4330.730 kb on - strand, within AO353_19720at 4330.783 kb on + strand, within AO353_19720at 4330.784 kb on - strand, within AO353_19720at 4330.784 kb on - strand, within AO353_19720at 4331.022 kb on - strandat 4331.022 kb on - strandat 4331.022 kb on - strandat 4331.079 kb on - strandat 4331.079 kb on - strandat 4331.079 kb on - strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.092 kb on + strandat 4331.092 kb on + strandat 4331.092 kb on + strandat 4331.093 kb on - strandat 4331.095 kb on + strandat 4331.096 kb on - strandat 4331.096 kb on - strandat 4331.096 kb on - strandat 4331.099 kb on + strandat 4331.099 kb on + strandat 4331.099 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.106 kb on + strandat 4331.107 kb on - strandat 4331.107 kb on - strandat 4331.107 kb on - strandat 4331.143 kb on + strandat 4331.143 kb on + strandat 4331.143 kb on + strandat 4331.170 kb on - strandat 4331.170 kb on - strandat 4331.608 kb on + strand, within AO353_19725at 4331.608 kb on + strand, within AO353_19725at 4331.608 kb on + strand, within AO353_19725at 4331.609 kb on - strand, within AO353_19725at 4331.609 kb on - strand, within AO353_19725at 4331.609 kb on - strand, within AO353_19725at 4331.624 kb on - strand, within AO353_19725at 4331.642 kb on - strand, within AO353_19725at 4331.642 kb on - strand, within AO353_19725at 4331.698 kb on + strand, within AO353_19725at 4331.699 kb on - strand, within AO353_19725at 4331.699 kb on - strand, within AO353_19725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,328,774 + AO353_19715 0.37 -0.3
4,328,774 + AO353_19715 0.37 +0.2
4,328,774 + AO353_19715 0.37 +0.5
4,328,775 - AO353_19715 0.37 +1.3
4,328,775 - AO353_19715 0.37 -0.2
4,328,775 - AO353_19715 0.37 -0.3
4,328,775 - AO353_19715 0.37 -1.0
4,328,775 - AO353_19715 0.37 +0.1
4,328,775 - AO353_19715 0.37 +0.4
4,328,879 + AO353_19715 0.43 -1.6
4,328,879 + AO353_19715 0.43 +1.2
4,328,880 - AO353_19715 0.44 +0.4
4,328,880 - AO353_19715 0.44 +0.3
4,329,092 + AO353_19715 0.57 +1.7
4,329,092 + AO353_19715 0.57 -0.8
4,329,092 + AO353_19715 0.57 -0.7
4,329,092 + AO353_19715 0.57 -0.3
4,329,093 - AO353_19715 0.57 +1.8
4,329,093 - AO353_19715 0.57 +0.3
4,329,093 - AO353_19715 0.57 +0.7
4,329,137 + AO353_19715 0.60 -0.2
4,329,233 + AO353_19715 0.66 -0.5
4,329,233 + AO353_19715 0.66 +0.6
4,329,234 - AO353_19715 0.66 +0.5
4,329,234 - AO353_19715 0.66 +0.1
4,329,575 + AO353_19715 0.87 +1.3
4,329,575 + AO353_19715 0.87 -0.3
4,329,576 - AO353_19715 0.87 +0.3
4,329,576 - AO353_19715 0.87 -0.3
4,329,831 - -0.9
4,329,831 - -0.9
4,329,864 + +0.3
4,329,864 + -0.0
4,329,864 + -0.6
4,329,864 + +1.3
4,329,864 + +1.3
4,329,865 - +0.3
4,329,865 - -0.3
4,330,159 + AO353_19720 0.34 -1.3
4,330,159 + AO353_19720 0.34 -2.0
4,330,160 - AO353_19720 0.34 +0.2
4,330,332 + AO353_19720 0.49 -0.9
4,330,418 + AO353_19720 0.57 +0.7
4,330,438 + AO353_19720 0.59 -0.7
4,330,684 + AO353_19720 0.81 +0.1
4,330,729 + AO353_19720 0.85 +1.7
4,330,729 + AO353_19720 0.85 -1.0
4,330,729 + AO353_19720 0.85 +1.1
4,330,730 - AO353_19720 0.85 +1.3
4,330,730 - AO353_19720 0.85 +1.3
4,330,783 + AO353_19720 0.89 +0.7
4,330,784 - AO353_19720 0.90 +0.9
4,330,784 - AO353_19720 0.90 +0.3
4,331,022 - -0.8
4,331,022 - -0.0
4,331,022 - +2.3
4,331,079 - -0.7
4,331,079 - -0.0
4,331,079 - +1.3
4,331,088 + +1.1
4,331,088 + -0.1
4,331,088 + +1.8
4,331,088 + -1.0
4,331,088 + +0.3
4,331,089 - +0.1
4,331,089 - -1.5
4,331,089 - -1.5
4,331,089 - +1.6
4,331,089 - -0.2
4,331,089 - +0.9
4,331,089 - +0.6
4,331,092 + +0.9
4,331,092 + +0.3
4,331,092 + -0.2
4,331,093 - -0.6
4,331,095 + -1.7
4,331,096 - +1.3
4,331,096 - +0.8
4,331,096 - +0.4
4,331,099 + +0.3
4,331,099 + -0.1
4,331,099 + +0.3
4,331,106 + -0.5
4,331,106 + -0.8
4,331,106 + -0.5
4,331,106 + -0.6
4,331,106 + -0.1
4,331,106 + +1.6
4,331,106 + -0.9
4,331,107 - -0.2
4,331,107 - +2.3
4,331,107 - -0.3
4,331,143 + +0.2
4,331,143 + -1.4
4,331,143 + -1.1
4,331,170 - -1.2
4,331,170 - +1.3
4,331,608 + AO353_19725 0.24 +0.0
4,331,608 + AO353_19725 0.24 +0.4
4,331,608 + AO353_19725 0.24 +0.3
4,331,609 - AO353_19725 0.24 -0.1
4,331,609 - AO353_19725 0.24 +0.6
4,331,609 - AO353_19725 0.24 -0.3
4,331,624 - AO353_19725 0.25 +0.3
4,331,642 - AO353_19725 0.26 +1.3
4,331,642 - AO353_19725 0.26 +0.1
4,331,698 + AO353_19725 0.29 +0.0
4,331,699 - AO353_19725 0.29 -0.9
4,331,699 - AO353_19725 0.29 +0.1

Or see this region's nucleotide sequence