Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19565

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19560 and AO353_19565 are separated by 150 nucleotidesAO353_19565 and AO353_19570 are separated by 10 nucleotidesAO353_19570 and AO353_19575 are separated by 529 nucleotides AO353_19560: AO353_19560 - ADP-ribosylglycohydrolase, at 4,286,636 to 4,287,559 _19560 AO353_19565: AO353_19565 - vanillate O-demethylase oxidoreductase VanB, at 4,287,710 to 4,288,168 _19565 AO353_19570: AO353_19570 - ArsR family transcriptional regulator, at 4,288,179 to 4,288,517 _19570 AO353_19575: AO353_19575 - dimethylglycine dehydrogenase, at 4,289,047 to 4,289,727 _19575 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4286.745 kb on - strand, within AO353_19560at 4286.751 kb on + strand, within AO353_19560at 4286.751 kb on + strand, within AO353_19560at 4286.893 kb on - strand, within AO353_19560at 4286.893 kb on - strand, within AO353_19560at 4286.931 kb on + strand, within AO353_19560at 4286.931 kb on + strand, within AO353_19560at 4286.931 kb on + strand, within AO353_19560at 4286.932 kb on - strand, within AO353_19560at 4286.932 kb on - strand, within AO353_19560at 4286.932 kb on - strand, within AO353_19560at 4286.932 kb on - strand, within AO353_19560at 4286.993 kb on + strand, within AO353_19560at 4286.994 kb on - strand, within AO353_19560at 4287.095 kb on - strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.122 kb on + strand, within AO353_19560at 4287.123 kb on - strand, within AO353_19560at 4287.123 kb on - strand, within AO353_19560at 4287.124 kb on + strand, within AO353_19560at 4287.124 kb on + strand, within AO353_19560at 4287.124 kb on + strand, within AO353_19560at 4287.124 kb on + strand, within AO353_19560at 4287.124 kb on + strand, within AO353_19560at 4287.125 kb on - strand, within AO353_19560at 4287.125 kb on - strand, within AO353_19560at 4287.125 kb on - strand, within AO353_19560at 4287.135 kb on + strand, within AO353_19560at 4287.135 kb on + strand, within AO353_19560at 4287.136 kb on - strand, within AO353_19560at 4287.136 kb on - strand, within AO353_19560at 4287.136 kb on - strand, within AO353_19560at 4287.136 kb on - strand, within AO353_19560at 4287.292 kb on - strand, within AO353_19560at 4287.315 kb on + strand, within AO353_19560at 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.482 kb on + strandat 4287.483 kb on - strandat 4287.483 kb on - strandat 4287.483 kb on - strandat 4287.483 kb on - strandat 4287.483 kb on - strandat 4287.490 kb on + strandat 4287.550 kb on + strandat 4287.551 kb on - strandat 4287.551 kb on - strandat 4287.551 kb on - strandat 4287.597 kb on + strandat 4287.626 kb on + strandat 4287.626 kb on + strandat 4287.627 kb on - strandat 4287.627 kb on - strandat 4287.627 kb on - strandat 4287.627 kb on - strandat 4287.647 kb on + strandat 4287.647 kb on + strandat 4287.685 kb on + strandat 4287.686 kb on - strandat 4287.686 kb on - strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.709 kb on + strandat 4287.710 kb on - strandat 4287.710 kb on - strandat 4287.710 kb on - strandat 4287.710 kb on - strandat 4287.710 kb on - strandat 4287.710 kb on - strandat 4287.881 kb on + strand, within AO353_19565at 4287.882 kb on - strand, within AO353_19565at 4287.956 kb on + strand, within AO353_19565at 4287.956 kb on + strand, within AO353_19565at 4287.980 kb on + strand, within AO353_19565at 4287.980 kb on + strand, within AO353_19565at 4287.980 kb on + strand, within AO353_19565at 4287.981 kb on - strand, within AO353_19565at 4287.981 kb on - strand, within AO353_19565at 4288.151 kb on + strandat 4288.151 kb on + strandat 4288.151 kb on + strandat 4288.152 kb on - strandat 4288.152 kb on - strandat 4288.152 kb on - strandat 4288.152 kb on - strandat 4288.152 kb on - strandat 4288.152 kb on - strandat 4288.199 kb on + strandat 4288.200 kb on - strandat 4288.530 kb on - strandat 4288.612 kb on + strandat 4288.612 kb on + strandat 4288.612 kb on + strandat 4288.613 kb on - strandat 4288.613 kb on - strandat 4288.622 kb on - strandat 4288.622 kb on - strandat 4288.624 kb on + strandat 4288.624 kb on + strandat 4288.624 kb on + strandat 4288.624 kb on + strandat 4288.624 kb on + strandat 4288.624 kb on + strandat 4288.625 kb on - strandat 4288.625 kb on - strandat 4288.625 kb on - strandat 4288.625 kb on - strandat 4288.625 kb on - strandat 4288.625 kb on - strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.628 kb on + strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.629 kb on - strandat 4288.660 kb on + strandat 4288.665 kb on + strandat 4288.665 kb on + strandat 4288.665 kb on + strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.666 kb on - strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.821 kb on + strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.822 kb on - strandat 4288.835 kb on + strandat 4288.835 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.851 kb on + strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.852 kb on - strandat 4288.883 kb on + strandat 4289.007 kb on - strandat 4289.017 kb on + strandat 4289.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,286,745 - AO353_19560 0.12 -0.6
4,286,751 + AO353_19560 0.12 -2.3
4,286,751 + AO353_19560 0.12 +1.3
4,286,893 - AO353_19560 0.28 +0.6
4,286,893 - AO353_19560 0.28 +0.1
4,286,931 + AO353_19560 0.32 -1.2
4,286,931 + AO353_19560 0.32 +0.2
4,286,931 + AO353_19560 0.32 +0.7
4,286,932 - AO353_19560 0.32 -0.8
4,286,932 - AO353_19560 0.32 -0.4
4,286,932 - AO353_19560 0.32 -0.3
4,286,932 - AO353_19560 0.32 -1.2
4,286,993 + AO353_19560 0.39 -0.7
4,286,994 - AO353_19560 0.39 -0.5
4,287,095 - AO353_19560 0.50 +3.3
4,287,122 + AO353_19560 0.53 -0.6
4,287,122 + AO353_19560 0.53 +0.1
4,287,122 + AO353_19560 0.53 +0.7
4,287,122 + AO353_19560 0.53 +0.2
4,287,122 + AO353_19560 0.53 -0.6
4,287,122 + AO353_19560 0.53 -0.2
4,287,123 - AO353_19560 0.53 -0.6
4,287,123 - AO353_19560 0.53 +0.1
4,287,124 + AO353_19560 0.53 -0.2
4,287,124 + AO353_19560 0.53 +0.7
4,287,124 + AO353_19560 0.53 +0.1
4,287,124 + AO353_19560 0.53 -0.4
4,287,124 + AO353_19560 0.53 -0.2
4,287,125 - AO353_19560 0.53 -1.0
4,287,125 - AO353_19560 0.53 -0.2
4,287,125 - AO353_19560 0.53 +0.1
4,287,135 + AO353_19560 0.54 +0.1
4,287,135 + AO353_19560 0.54 +0.9
4,287,136 - AO353_19560 0.54 -0.6
4,287,136 - AO353_19560 0.54 -2.0
4,287,136 - AO353_19560 0.54 +0.5
4,287,136 - AO353_19560 0.54 +0.1
4,287,292 - AO353_19560 0.71 +1.3
4,287,315 + AO353_19560 0.73 -0.4
4,287,482 + -1.0
4,287,482 + +0.9
4,287,482 + -0.6
4,287,482 + +0.2
4,287,482 + -0.1
4,287,482 + +0.3
4,287,482 + -1.4
4,287,483 - -0.8
4,287,483 - +0.4
4,287,483 - -0.2
4,287,483 - +1.3
4,287,483 - +1.3
4,287,490 + +1.3
4,287,550 + -0.4
4,287,551 - +0.5
4,287,551 - +0.1
4,287,551 - -0.9
4,287,597 + +0.1
4,287,626 + +1.0
4,287,626 + +0.3
4,287,627 - +0.7
4,287,627 - -0.7
4,287,627 - -1.1
4,287,627 - -1.5
4,287,647 + -1.2
4,287,647 + +2.3
4,287,685 + -0.9
4,287,686 - +0.3
4,287,686 - +0.7
4,287,709 + +0.3
4,287,709 + -0.8
4,287,709 + -0.2
4,287,709 + +0.6
4,287,709 + -1.1
4,287,709 + -0.6
4,287,709 + -0.2
4,287,709 + -0.4
4,287,710 - -0.5
4,287,710 - -0.6
4,287,710 - +0.3
4,287,710 - +0.4
4,287,710 - +2.3
4,287,710 - +0.2
4,287,881 + AO353_19565 0.37 +0.4
4,287,882 - AO353_19565 0.37 +0.6
4,287,956 + AO353_19565 0.54 +1.3
4,287,956 + AO353_19565 0.54 +0.7
4,287,980 + AO353_19565 0.59 +0.6
4,287,980 + AO353_19565 0.59 -0.6
4,287,980 + AO353_19565 0.59 -0.1
4,287,981 - AO353_19565 0.59 +1.3
4,287,981 - AO353_19565 0.59 +0.6
4,288,151 + -0.7
4,288,151 + -2.1
4,288,151 + -0.0
4,288,152 - -0.1
4,288,152 - -0.2
4,288,152 - -2.2
4,288,152 - -1.2
4,288,152 - +0.4
4,288,152 - -0.3
4,288,199 + +0.1
4,288,200 - -0.0
4,288,530 - -1.7
4,288,612 + +0.3
4,288,612 + +0.3
4,288,612 + -0.4
4,288,613 - +1.9
4,288,613 - -0.5
4,288,622 - +1.0
4,288,622 - -0.8
4,288,624 + +0.6
4,288,624 + +0.3
4,288,624 + -1.1
4,288,624 + -1.3
4,288,624 + +0.3
4,288,624 + -1.0
4,288,625 - -0.7
4,288,625 - -0.0
4,288,625 - +0.1
4,288,625 - +0.9
4,288,625 - -0.3
4,288,625 - +1.3
4,288,628 + +0.3
4,288,628 + +0.3
4,288,628 + +0.9
4,288,628 + +1.3
4,288,628 + +0.5
4,288,628 + +0.7
4,288,628 + -0.2
4,288,628 + -0.1
4,288,628 + -0.3
4,288,628 + +1.9
4,288,628 + -1.9
4,288,628 + -0.1
4,288,628 + +2.3
4,288,628 + -0.3
4,288,628 + -0.8
4,288,628 + +0.8
4,288,628 + +0.3
4,288,628 + -1.6
4,288,628 + +0.8
4,288,628 + +0.9
4,288,628 + +1.9
4,288,628 + -0.7
4,288,628 + -0.2
4,288,628 + -0.2
4,288,628 + -0.7
4,288,628 + -0.9
4,288,628 + -0.7
4,288,629 - -0.5
4,288,629 - -0.3
4,288,629 - -0.4
4,288,629 - +2.3
4,288,629 - +0.4
4,288,629 - -1.4
4,288,629 - +1.2
4,288,629 - -0.0
4,288,629 - +1.6
4,288,629 - +0.3
4,288,629 - -0.1
4,288,629 - -0.7
4,288,629 - -0.1
4,288,629 - -1.0
4,288,629 - +1.0
4,288,629 - +0.4
4,288,629 - +0.0
4,288,629 - -0.3
4,288,629 - +1.1
4,288,629 - +0.1
4,288,629 - -0.2
4,288,629 - +0.9
4,288,660 + -0.4
4,288,665 + -0.6
4,288,665 + +1.7
4,288,665 + +1.0
4,288,666 - -0.4
4,288,666 - -0.4
4,288,666 - +1.3
4,288,666 - +1.0
4,288,666 - -1.2
4,288,666 - -0.3
4,288,666 - -1.2
4,288,666 - -0.6
4,288,821 + +0.8
4,288,821 + -0.3
4,288,821 + -0.9
4,288,821 + -0.1
4,288,821 + -0.9
4,288,821 + -0.9
4,288,821 + +0.1
4,288,821 + +1.7
4,288,821 + -0.9
4,288,821 + +2.9
4,288,821 + +0.5
4,288,821 + +1.0
4,288,821 + -0.5
4,288,821 + +0.7
4,288,822 - -0.6
4,288,822 - -1.6
4,288,822 - -0.3
4,288,822 - -0.1
4,288,822 - -0.7
4,288,822 - -0.6
4,288,822 - +0.6
4,288,822 - -1.7
4,288,835 + +0.3
4,288,835 + +0.7
4,288,851 + +2.3
4,288,851 + +0.1
4,288,851 + -0.4
4,288,851 + +1.0
4,288,851 + -1.6
4,288,851 + +0.1
4,288,851 + +0.7
4,288,851 + -1.3
4,288,851 + +0.5
4,288,851 + -0.5
4,288,851 + +0.7
4,288,851 + +0.1
4,288,851 + +2.5
4,288,851 + +0.3
4,288,851 + -1.4
4,288,851 + -0.7
4,288,852 - -0.3
4,288,852 - +0.7
4,288,852 - +0.1
4,288,852 - -0.1
4,288,852 - -1.3
4,288,852 - +0.7
4,288,852 - -0.4
4,288,852 - +1.3
4,288,852 - +0.5
4,288,852 - +1.7
4,288,852 - +1.7
4,288,852 - -0.4
4,288,852 - -1.5
4,288,883 + -0.2
4,289,007 - +0.9
4,289,017 + -1.0
4,289,017 + +0.0

Or see this region's nucleotide sequence