Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02655

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02645 and AO353_02650 are separated by 27 nucleotidesAO353_02650 and AO353_02655 are separated by 15 nucleotidesAO353_02655 and AO353_02660 are separated by 165 nucleotides AO353_02645: AO353_02645 - hypothetical protein, at 563,768 to 564,352 _02645 AO353_02650: AO353_02650 - SAM-dependent methyltransferase, at 564,380 to 565,042 _02650 AO353_02655: AO353_02655 - peptidase P60, at 565,058 to 565,591 _02655 AO353_02660: AO353_02660 - peptidase P60, at 565,757 to 566,380 _02660 Position (kb) 565 566Strain fitness (log2 ratio) -2 -1 0 1 2 3at 564.134 kb on + strand, within AO353_02645at 564.134 kb on + strand, within AO353_02645at 564.197 kb on - strand, within AO353_02645at 564.264 kb on - strand, within AO353_02645at 564.278 kb on + strand, within AO353_02645at 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.309 kb on - strandat 564.365 kb on + strandat 564.365 kb on + strandat 564.366 kb on - strandat 564.382 kb on - strandat 564.464 kb on - strand, within AO353_02650at 564.512 kb on + strand, within AO353_02650at 564.513 kb on - strand, within AO353_02650at 564.543 kb on - strand, within AO353_02650at 564.588 kb on + strand, within AO353_02650at 564.589 kb on - strand, within AO353_02650at 564.589 kb on - strand, within AO353_02650at 564.589 kb on - strand, within AO353_02650at 564.753 kb on + strand, within AO353_02650at 564.753 kb on + strand, within AO353_02650at 564.754 kb on - strand, within AO353_02650at 564.754 kb on - strand, within AO353_02650at 564.754 kb on - strandat 564.754 kb on - strand, within AO353_02650at 564.754 kb on - strand, within AO353_02650at 564.754 kb on - strand, within AO353_02650at 564.754 kb on - strand, within AO353_02650at 564.999 kb on + strandat 564.999 kb on + strandat 564.999 kb on + strandat 564.999 kb on + strandat 564.999 kb on + strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.003 kb on + strandat 565.004 kb on - strandat 565.004 kb on - strandat 565.004 kb on - strandat 565.004 kb on - strandat 565.004 kb on - strandat 565.004 kb on - strandat 565.005 kb on + strandat 565.006 kb on - strandat 565.006 kb on - strandat 565.059 kb on + strandat 565.059 kb on + strandat 565.110 kb on + strandat 565.110 kb on + strandat 565.110 kb on + strandat 565.110 kb on + strandat 565.111 kb on - strandat 565.111 kb on - strandat 565.125 kb on + strand, within AO353_02655at 565.126 kb on - strand, within AO353_02655at 565.126 kb on - strand, within AO353_02655at 565.157 kb on - strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.200 kb on + strand, within AO353_02655at 565.201 kb on - strand, within AO353_02655at 565.201 kb on - strand, within AO353_02655at 565.201 kb on - strand, within AO353_02655at 565.201 kb on - strand, within AO353_02655at 565.201 kb on - strand, within AO353_02655at 565.265 kb on + strand, within AO353_02655at 565.266 kb on - strand, within AO353_02655at 565.266 kb on - strand, within AO353_02655at 565.266 kb on - strand, within AO353_02655at 565.333 kb on + strand, within AO353_02655at 565.333 kb on + strand, within AO353_02655at 565.357 kb on - strand, within AO353_02655at 565.357 kb on - strand, within AO353_02655at 565.396 kb on + strand, within AO353_02655at 565.396 kb on + strand, within AO353_02655at 565.396 kb on + strand, within AO353_02655at 565.396 kb on + strand, within AO353_02655at 565.396 kb on + strand, within AO353_02655at 565.397 kb on - strand, within AO353_02655at 565.413 kb on + strand, within AO353_02655at 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.568 kb on + strandat 565.569 kb on - strandat 565.569 kb on - strandat 565.569 kb on - strandat 565.569 kb on - strandat 565.569 kb on - strandat 565.569 kb on - strandat 565.591 kb on + strandat 565.591 kb on + strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.592 kb on - strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.593 kb on + strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.594 kb on - strandat 565.665 kb on - strandat 565.672 kb on + strandat 565.676 kb on + strandat 565.677 kb on - strandat 565.686 kb on + strandat 565.686 kb on + strandat 565.686 kb on + strandat 565.686 kb on + strandat 565.724 kb on + strandat 565.732 kb on + strandat 565.738 kb on + strandat 565.738 kb on - strandat 565.831 kb on - strand, within AO353_02660at 565.831 kb on - strand, within AO353_02660at 565.847 kb on - strand, within AO353_02660at 565.908 kb on + strand, within AO353_02660at 565.908 kb on + strand, within AO353_02660at 565.909 kb on - strand, within AO353_02660at 566.067 kb on + strand, within AO353_02660at 566.185 kb on - strand, within AO353_02660at 566.241 kb on + strand, within AO353_02660at 566.241 kb on + strand, within AO353_02660at 566.241 kb on + strand, within AO353_02660at 566.241 kb on + strand, within AO353_02660at 566.242 kb on - strand, within AO353_02660at 566.246 kb on - strand, within AO353_02660at 566.375 kb on + strandat 566.375 kb on + strandat 566.375 kb on + strandat 566.375 kb on + strandat 566.375 kb on + strandat 566.375 kb on + strandat 566.376 kb on - strandat 566.376 kb on - strandat 566.376 kb on - strandat 566.376 kb on - strandat 566.404 kb on + strandat 566.404 kb on + strandat 566.419 kb on + strandat 566.419 kb on + strandat 566.419 kb on + strandat 566.420 kb on - strandat 566.420 kb on - strandat 566.428 kb on + strandat 566.428 kb on + strandat 566.428 kb on + strandat 566.429 kb on - strandat 566.429 kb on - strandat 566.429 kb on - strandat 566.429 kb on - strandat 566.469 kb on + strandat 566.470 kb on - strandat 566.490 kb on + strandat 566.490 kb on + strandat 566.490 kb on + strandat 566.491 kb on - strandat 566.491 kb on - strandat 566.491 kb on - strandat 566.491 kb on - strandat 566.491 kb on - strandat 566.498 kb on + strandat 566.498 kb on + strandat 566.509 kb on + strandat 566.509 kb on + strandat 566.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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564,134 + AO353_02645 0.63 +0.1
564,134 + AO353_02645 0.63 -0.2
564,197 - AO353_02645 0.73 +1.7
564,264 - AO353_02645 0.85 -0.8
564,278 + AO353_02645 0.87 +0.4
564,308 + -0.6
564,308 + +0.3
564,308 + +1.4
564,308 + -0.3
564,308 + -0.2
564,308 + +0.6
564,308 + -1.7
564,308 + +1.1
564,309 - +1.4
564,309 - +0.5
564,309 - +1.1
564,309 - +0.8
564,309 - -1.0
564,309 - +1.4
564,309 - +0.2
564,365 + +0.7
564,365 + -0.2
564,366 - +0.2
564,382 - +0.0
564,464 - AO353_02650 0.13 +0.4
564,512 + AO353_02650 0.20 +0.4
564,513 - AO353_02650 0.20 -0.6
564,543 - AO353_02650 0.25 +0.4
564,588 + AO353_02650 0.31 +0.5
564,589 - AO353_02650 0.32 -0.7
564,589 - AO353_02650 0.32 +0.2
564,589 - AO353_02650 0.32 +0.1
564,753 + AO353_02650 0.56 +0.1
564,753 + AO353_02650 0.56 +0.9
564,754 - AO353_02650 0.56 +0.3
564,754 - AO353_02650 0.56 -1.6
564,754 - -0.1
564,754 - AO353_02650 0.56 -0.8
564,754 - AO353_02650 0.56 +0.0
564,754 - AO353_02650 0.56 +0.1
564,754 - AO353_02650 0.56 +1.0
564,999 + +0.7
564,999 + -0.6
564,999 + +0.7
564,999 + +1.4
564,999 + +0.2
565,000 - +0.1
565,000 - -0.7
565,000 - -0.3
565,000 - -0.2
565,000 - +0.3
565,000 - -0.4
565,003 + -0.9
565,003 + +1.4
565,003 + +0.9
565,003 + +0.4
565,003 + +0.2
565,003 + +0.9
565,003 + +0.1
565,003 + +0.3
565,003 + -0.4
565,003 + +0.0
565,003 + -0.5
565,003 + +0.8
565,004 - +1.9
565,004 - +2.4
565,004 - -1.1
565,004 - +2.8
565,004 - +0.7
565,004 - -0.1
565,005 + -1.6
565,006 - +0.2
565,006 - +2.1
565,059 + +0.2
565,059 + -0.5
565,110 + +0.4
565,110 + -0.4
565,110 + +0.1
565,110 + +0.7
565,111 - -0.4
565,111 - +1.5
565,125 + AO353_02655 0.13 +1.4
565,126 - AO353_02655 0.13 -1.3
565,126 - AO353_02655 0.13 -0.6
565,157 - AO353_02655 0.19 +1.2
565,200 + AO353_02655 0.27 +2.3
565,200 + AO353_02655 0.27 +0.2
565,200 + AO353_02655 0.27 -0.4
565,200 + AO353_02655 0.27 -1.7
565,200 + AO353_02655 0.27 +1.0
565,200 + AO353_02655 0.27 +0.3
565,201 - AO353_02655 0.27 -0.4
565,201 - AO353_02655 0.27 +0.4
565,201 - AO353_02655 0.27 +1.4
565,201 - AO353_02655 0.27 +0.0
565,201 - AO353_02655 0.27 +0.7
565,265 + AO353_02655 0.39 +1.1
565,266 - AO353_02655 0.39 -0.3
565,266 - AO353_02655 0.39 +1.1
565,266 - AO353_02655 0.39 +0.6
565,333 + AO353_02655 0.51 +0.2
565,333 + AO353_02655 0.51 +1.2
565,357 - AO353_02655 0.56 +0.9
565,357 - AO353_02655 0.56 +0.7
565,396 + AO353_02655 0.63 -0.7
565,396 + AO353_02655 0.63 +0.2
565,396 + AO353_02655 0.63 +0.9
565,396 + AO353_02655 0.63 +0.2
565,396 + AO353_02655 0.63 -2.3
565,397 - AO353_02655 0.63 +1.9
565,413 + AO353_02655 0.66 -1.6
565,568 + +0.4
565,568 + +0.4
565,568 + +0.4
565,568 + +0.6
565,568 + -1.7
565,568 + +1.4
565,568 + +0.7
565,568 + -0.9
565,569 - +1.4
565,569 - +0.5
565,569 - -0.6
565,569 - +1.1
565,569 - -0.8
565,569 - -0.7
565,591 + -2.1
565,591 + +0.3
565,592 - +0.8
565,592 - -0.3
565,592 - +0.2
565,592 - +0.6
565,592 - -1.5
565,592 - +0.5
565,592 - +0.2
565,593 + -0.6
565,593 + +0.0
565,593 + -2.1
565,593 + -0.1
565,593 + -0.3
565,593 + -1.6
565,593 + -0.3
565,593 + -0.1
565,593 + -0.1
565,593 + -1.7
565,593 + +0.2
565,593 + +0.6
565,593 + +0.4
565,593 + +0.4
565,593 + -0.6
565,594 - +0.4
565,594 - +1.0
565,594 - +1.1
565,594 - +0.0
565,594 - +1.0
565,594 - +0.6
565,594 - -0.5
565,594 - -0.0
565,594 - -0.3
565,594 - +0.6
565,594 - +0.4
565,594 - -0.3
565,594 - +0.9
565,665 - -0.7
565,672 + +0.3
565,676 + -0.8
565,677 - -0.3
565,686 + +0.1
565,686 + -0.6
565,686 + +2.0
565,686 + +0.0
565,724 + -0.4
565,732 + +0.3
565,738 + +1.3
565,738 - +1.7
565,831 - AO353_02660 0.12 -0.4
565,831 - AO353_02660 0.12 +0.4
565,847 - AO353_02660 0.14 -1.3
565,908 + AO353_02660 0.24 +0.8
565,908 + AO353_02660 0.24 +0.8
565,909 - AO353_02660 0.24 -1.4
566,067 + AO353_02660 0.50 -0.3
566,185 - AO353_02660 0.69 -0.8
566,241 + AO353_02660 0.78 +0.4
566,241 + AO353_02660 0.78 +0.9
566,241 + AO353_02660 0.78 +0.9
566,241 + AO353_02660 0.78 +0.6
566,242 - AO353_02660 0.78 -0.4
566,246 - AO353_02660 0.78 -1.2
566,375 + +1.1
566,375 + -0.6
566,375 + +0.7
566,375 + -0.3
566,375 + -0.4
566,375 + -2.3
566,376 - -0.9
566,376 - -1.1
566,376 - +0.8
566,376 - +0.3
566,404 + +0.6
566,404 + +0.9
566,419 + -0.3
566,419 + +0.1
566,419 + +0.6
566,420 - +0.4
566,420 - -0.4
566,428 + -0.5
566,428 + +0.1
566,428 + -0.1
566,429 - -0.0
566,429 - -0.1
566,429 - -0.8
566,429 - +1.4
566,469 + +0.1
566,470 - +2.4
566,490 + -0.1
566,490 + +0.9
566,490 + -0.4
566,491 - +1.0
566,491 - +0.4
566,491 - +0.9
566,491 - +0.4
566,491 - -0.0
566,498 + -0.6
566,498 + +0.2
566,509 + -1.4
566,509 + -0.3
566,509 + -0.4

Or see this region's nucleotide sequence