Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00750 and AO353_00755 are separated by 376 nucleotides AO353_00755 and AO353_00760 are separated by 212 nucleotides AO353_00760 and AO353_00765 are separated by 234 nucleotides
AO353_00750: AO353_00750 - GntR family transcriptional regulator, at 165,187 to 165,951
_00750
AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521
_00755
AO353_00760: AO353_00760 - hypothetical protein, at 167,734 to 168,078
_00760
AO353_00765: AO353_00765 - D-alanyl-D-alanine carboxypeptidase, at 168,313 to 169,773
_00765
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.384 kb on - strand, within AO353_00750 at 165.384 kb on - strand, within AO353_00750 at 165.413 kb on + strand, within AO353_00750 at 165.613 kb on + strand, within AO353_00750 at 165.664 kb on + strand, within AO353_00750 at 165.665 kb on - strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.869 kb on + strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.995 kb on + strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.998 kb on + strand at 165.999 kb on - strand at 165.999 kb on - strand at 165.999 kb on - strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.031 kb on - strand at 166.049 kb on + strand at 166.049 kb on + strand at 166.050 kb on - strand at 166.050 kb on - strand at 166.078 kb on - strand at 166.078 kb on - strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.086 kb on - strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.102 kb on - strand at 166.123 kb on + strand at 166.124 kb on - strand at 166.129 kb on + strand at 166.129 kb on + strand at 166.209 kb on + strand at 166.226 kb on + strand at 166.235 kb on - strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.303 kb on + strand at 166.399 kb on + strand at 166.399 kb on + strand at 166.400 kb on - strand at 166.622 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.826 kb on + strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 167.069 kb on + strand, within AO353_00755 at 167.069 kb on + strand, within AO353_00755 at 167.069 kb on + strand, within AO353_00755 at 167.070 kb on - strand, within AO353_00755 at 167.216 kb on + strand, within AO353_00755 at 167.337 kb on + strand, within AO353_00755 at 167.361 kb on + strand, within AO353_00755 at 167.362 kb on - strand, within AO353_00755 at 167.362 kb on - strand, within AO353_00755 at 167.371 kb on + strand, within AO353_00755 at 167.413 kb on + strand at 167.413 kb on + strand at 167.413 kb on + strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.519 kb on + strand at 167.520 kb on - strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.586 kb on + strand at 167.586 kb on + strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.663 kb on + strand at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.795 kb on - strand, within AO353_00760 at 167.795 kb on - strand, within AO353_00760 at 167.892 kb on - strand, within AO353_00760 at 168.070 kb on - strand at 168.097 kb on + strand at 168.098 kb on - strand at 168.115 kb on + strand at 168.115 kb on + strand at 168.124 kb on - strand at 168.124 kb on - strand at 168.124 kb on - strand at 168.228 kb on + strand at 168.262 kb on + strand at 168.262 kb on + strand at 168.263 kb on - strand at 168.263 kb on - strand at 168.297 kb on + strand at 168.305 kb on + strand at 168.305 kb on + strand at 168.456 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 165,384 - AO353_00750 0.26 +1.6 165,384 - AO353_00750 0.26 -1.3 165,413 + AO353_00750 0.30 -0.1 165,613 + AO353_00750 0.56 -1.0 165,664 + AO353_00750 0.62 -1.8 165,665 - AO353_00750 0.62 -1.0 165,861 + AO353_00750 0.88 -1.4 165,861 + AO353_00750 0.88 -1.3 165,862 - AO353_00750 0.88 +2.0 165,862 - AO353_00750 0.88 -0.7 165,869 + AO353_00750 0.89 +0.5 165,870 - AO353_00750 0.89 -1.0 165,870 - AO353_00750 0.89 -1.9 165,995 + -1.2 165,996 - -0.3 165,996 - +0.7 165,996 - +0.2 165,996 - -0.7 165,996 - -0.5 165,998 + +0.3 165,999 - +0.4 165,999 - +0.1 165,999 - -2.9 166,023 + +0.7 166,023 + -0.9 166,023 + +0.5 166,023 + -0.9 166,023 + -1.9 166,023 + -1.5 166,024 - +0.3 166,024 - -0.7 166,024 - +1.0 166,024 - -0.0 166,031 - -0.8 166,049 + -1.0 166,049 + -0.7 166,050 - +0.9 166,050 - -1.3 166,078 - -0.1 166,078 - -0.5 166,085 + +0.3 166,085 + +0.5 166,085 + +0.1 166,085 + -1.0 166,086 - -1.0 166,087 + -1.0 166,087 + +0.3 166,087 + -0.5 166,087 + -0.3 166,087 + -1.7 166,087 + +0.3 166,088 - +0.5 166,088 - -0.8 166,088 - -0.0 166,088 - +0.9 166,088 - +0.8 166,088 - -0.4 166,088 - +0.2 166,088 - +0.9 166,088 - -2.0 166,088 - -0.2 166,101 + +0.5 166,101 + -0.0 166,101 + -1.4 166,102 - -0.5 166,123 + -1.0 166,124 - +0.1 166,129 + +0.7 166,129 + -0.8 166,209 + +1.0 166,226 + -0.1 166,235 - -0.1 166,295 + -0.5 166,295 + -0.0 166,295 + +0.9 166,296 - +0.3 166,296 - +0.4 166,296 - -0.8 166,296 - +1.3 166,301 + +1.3 166,301 + -1.1 166,301 + -0.1 166,301 + -1.5 166,301 + -0.0 166,301 + -0.2 166,302 - -1.3 166,302 - -0.5 166,302 - +1.6 166,302 - -0.6 166,302 - -0.8 166,302 - +0.8 166,302 - +1.3 166,302 - +1.1 166,302 - -0.9 166,303 + -0.0 166,399 + +0.6 166,399 + +0.7 166,400 - +0.3 166,622 + AO353_00755 0.25 +0.7 166,643 + AO353_00755 0.26 -0.8 166,643 + AO353_00755 0.26 -0.2 166,644 - AO353_00755 0.26 +1.7 166,644 - AO353_00755 0.26 +1.9 166,826 + AO353_00755 0.42 +1.0 166,827 - AO353_00755 0.42 +1.1 166,827 - AO353_00755 0.42 +0.4 166,827 - AO353_00755 0.42 +1.8 166,827 - AO353_00755 0.42 -0.0 166,827 - AO353_00755 0.42 +0.9 167,069 + AO353_00755 0.62 -0.4 167,069 + AO353_00755 0.62 +0.5 167,069 + AO353_00755 0.62 -0.2 167,070 - AO353_00755 0.62 -0.7 167,216 + AO353_00755 0.74 +0.3 167,337 + AO353_00755 0.85 -0.1 167,361 + AO353_00755 0.87 +0.7 167,362 - AO353_00755 0.87 +0.3 167,362 - AO353_00755 0.87 -0.0 167,371 + AO353_00755 0.87 +0.0 167,413 + -0.3 167,413 + +0.8 167,413 + -0.7 167,414 - -1.1 167,414 - -0.1 167,414 - +0.2 167,414 - -0.9 167,485 + -1.4 167,485 + +0.9 167,485 + +1.9 167,485 + -0.0 167,485 + -0.3 167,485 + -0.6 167,485 + -0.1 167,486 - +2.0 167,486 - +1.9 167,486 - +0.1 167,486 - -1.5 167,519 + -0.6 167,520 - -1.5 167,578 + +0.3 167,578 + +0.1 167,578 + -0.6 167,578 + +0.6 167,578 + +0.5 167,578 + -1.4 167,578 + +0.2 167,578 + -1.6 167,578 + +0.4 167,578 + +0.5 167,578 + -0.0 167,578 + -0.8 167,579 - +0.7 167,579 - -1.2 167,579 - -0.7 167,579 - +2.0 167,579 - -0.2 167,579 - -0.7 167,586 + +0.9 167,586 + +0.7 167,587 - +1.7 167,587 - +0.4 167,587 - +0.3 167,587 - +0.5 167,587 - +1.7 167,663 + -0.0 167,794 + AO353_00760 0.17 -0.7 167,794 + AO353_00760 0.17 +0.1 167,794 + AO353_00760 0.17 +0.9 167,794 + AO353_00760 0.17 +0.7 167,794 + AO353_00760 0.17 -0.6 167,795 - AO353_00760 0.18 -1.5 167,795 - AO353_00760 0.18 +0.4 167,892 - AO353_00760 0.46 -1.3 168,070 - +0.3 168,097 + -0.6 168,098 - -0.5 168,115 + +1.3 168,115 + +0.5 168,124 - -1.0 168,124 - +0.2 168,124 - +0.5 168,228 + +0.5 168,262 + -0.3 168,262 + -1.2 168,263 - +0.4 168,263 - +1.1 168,297 + -2.9 168,305 + +0.7 168,305 + +1.0 168,456 - +0.0
Or see this region's nucleotide sequence