Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00660 and AO353_00665 are separated by 78 nucleotides AO353_00665 and AO353_00670 are separated by 120 nucleotides AO353_00670 and AO353_00675 are separated by 205 nucleotides
AO353_00660: AO353_00660 - transcriptional regulator, at 140,158 to 140,892
_00660
AO353_00665: AO353_00665 - adenine phosphoribosyltransferase, at 140,971 to 141,519
_00665
AO353_00670: AO353_00670 - acyl-CoA dehydrogenase, at 141,640 to 142,788
_00670
AO353_00675: AO353_00675 - recombination protein RecR, at 142,994 to 143,596
_00675
Position (kb)
141
142
143 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 140.749 kb on + strand, within AO353_00660 at 140.749 kb on + strand at 140.749 kb on + strand, within AO353_00660 at 140.749 kb on + strand, within AO353_00660 at 140.749 kb on + strand, within AO353_00660 at 140.749 kb on + strand, within AO353_00660 at 140.749 kb on + strand, within AO353_00660 at 140.750 kb on - strand, within AO353_00660 at 140.750 kb on - strand, within AO353_00660 at 140.750 kb on - strand, within AO353_00660 at 140.750 kb on - strand, within AO353_00660 at 140.932 kb on + strand at 140.932 kb on + strand at 140.933 kb on - strand at 140.933 kb on - strand at 140.933 kb on - strand at 140.934 kb on + strand at 140.934 kb on + strand at 140.934 kb on + strand at 140.934 kb on + strand at 140.934 kb on + strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.935 kb on - strand at 140.949 kb on - strand at 141.115 kb on + strand, within AO353_00665 at 141.115 kb on + strand, within AO353_00665 at 141.245 kb on + strand, within AO353_00665 at 141.245 kb on + strand, within AO353_00665 at 141.245 kb on + strand, within AO353_00665 at 141.246 kb on - strand, within AO353_00665 at 141.246 kb on - strand, within AO353_00665 at 141.246 kb on - strand, within AO353_00665 at 141.427 kb on - strand, within AO353_00665 at 141.427 kb on - strand, within AO353_00665 at 141.517 kb on + strand at 141.517 kb on + strand at 141.518 kb on - strand at 141.518 kb on - strand at 141.518 kb on - strand at 141.518 kb on - strand at 141.518 kb on - strand at 141.518 kb on - strand at 141.583 kb on + strand at 141.752 kb on + strand at 141.753 kb on - strand at 141.753 kb on - strand at 141.753 kb on - strand at 142.069 kb on - strand, within AO353_00670 at 142.278 kb on + strand, within AO353_00670 at 142.278 kb on + strand, within AO353_00670 at 142.279 kb on - strand, within AO353_00670 at 142.281 kb on - strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.655 kb on + strand, within AO353_00670 at 142.656 kb on - strand, within AO353_00670 at 142.656 kb on - strand, within AO353_00670 at 142.769 kb on + strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.819 kb on + strand at 142.819 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.923 kb on - strand at 142.932 kb on + strand at 142.932 kb on + strand at 142.932 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 143.110 kb on + strand, within AO353_00675 at 143.111 kb on - strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.195 kb on - strand, within AO353_00675 at 143.195 kb on - strand, within AO353_00675 at 143.289 kb on + strand, within AO353_00675 at 143.290 kb on - strand, within AO353_00675 at 143.323 kb on - strand, within AO353_00675 at 143.323 kb on - strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.515 kb on + strand, within AO353_00675 at 143.516 kb on - strand, within AO353_00675 at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.632 kb on + strand at 143.633 kb on - strand at 143.633 kb on - strand at 143.634 kb on + strand at 143.634 kb on + strand at 143.748 kb on + strand at 143.748 kb on + strand at 143.749 kb on - strand at 143.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 140,749 + AO353_00660 0.80 -0.3 140,749 + -0.3 140,749 + AO353_00660 0.80 -0.5 140,749 + AO353_00660 0.80 -0.3 140,749 + AO353_00660 0.80 -0.5 140,749 + AO353_00660 0.80 +0.3 140,749 + AO353_00660 0.80 +1.0 140,750 - AO353_00660 0.81 +0.1 140,750 - AO353_00660 0.81 -1.0 140,750 - AO353_00660 0.81 -0.4 140,750 - AO353_00660 0.81 -0.7 140,932 + -1.5 140,932 + +1.3 140,933 - +0.1 140,933 - -0.5 140,933 - -1.7 140,934 + +0.3 140,934 + +0.9 140,934 + +0.3 140,934 + -0.3 140,934 + +2.3 140,935 - -1.3 140,935 - +1.4 140,935 - -1.2 140,935 - +0.2 140,935 - -1.1 140,935 - -0.9 140,935 - -0.4 140,949 - -2.2 141,115 + AO353_00665 0.26 +0.5 141,115 + AO353_00665 0.26 +1.3 141,245 + AO353_00665 0.50 +0.3 141,245 + AO353_00665 0.50 +1.3 141,245 + AO353_00665 0.50 +0.7 141,246 - AO353_00665 0.50 +1.1 141,246 - AO353_00665 0.50 +0.4 141,246 - AO353_00665 0.50 -0.0 141,427 - AO353_00665 0.83 -0.5 141,427 - AO353_00665 0.83 +0.9 141,517 + +0.6 141,517 + -0.3 141,518 - -1.0 141,518 - -0.3 141,518 - -0.1 141,518 - +0.3 141,518 - -0.8 141,518 - -0.6 141,583 + -0.0 141,752 + -0.2 141,753 - -0.7 141,753 - -0.3 141,753 - +2.6 142,069 - AO353_00670 0.37 +0.3 142,278 + AO353_00670 0.56 +0.5 142,278 + AO353_00670 0.56 +0.8 142,279 - AO353_00670 0.56 -1.0 142,281 - AO353_00670 0.56 +1.1 142,337 + AO353_00670 0.61 -0.7 142,337 + AO353_00670 0.61 +1.0 142,337 + AO353_00670 0.61 -0.7 142,338 - AO353_00670 0.61 -0.2 142,338 - AO353_00670 0.61 -0.3 142,338 - AO353_00670 0.61 +0.3 142,655 + AO353_00670 0.88 +0.8 142,656 - AO353_00670 0.88 +0.3 142,656 - AO353_00670 0.88 +0.3 142,769 + -0.3 142,770 - +0.1 142,770 - +0.4 142,770 - +0.3 142,770 - -0.1 142,770 - -1.5 142,819 + +0.1 142,819 + +0.6 142,922 + -0.7 142,922 + -0.4 142,922 + +0.3 142,922 + -0.0 142,923 - -0.4 142,932 + +0.3 142,932 + +1.5 142,932 + -0.5 142,995 + -1.4 142,995 + -0.0 142,995 + +1.3 142,995 + +1.3 143,110 + AO353_00675 0.19 -0.3 143,111 - AO353_00675 0.19 -0.7 143,133 + AO353_00675 0.23 -1.3 143,133 + AO353_00675 0.23 -0.1 143,133 + AO353_00675 0.23 +2.3 143,133 + AO353_00675 0.23 -1.0 143,134 - AO353_00675 0.23 -0.9 143,134 - AO353_00675 0.23 +0.5 143,134 - AO353_00675 0.23 -0.1 143,134 - AO353_00675 0.23 +1.0 143,134 - AO353_00675 0.23 +0.5 143,195 - AO353_00675 0.33 -0.0 143,195 - AO353_00675 0.33 +0.7 143,289 + AO353_00675 0.49 -1.4 143,290 - AO353_00675 0.49 +0.4 143,323 - AO353_00675 0.55 -1.3 143,323 - AO353_00675 0.55 -1.4 143,354 + AO353_00675 0.60 -1.0 143,354 + AO353_00675 0.60 -0.0 143,354 + AO353_00675 0.60 -0.7 143,354 + AO353_00675 0.60 -0.3 143,354 + AO353_00675 0.60 +0.4 143,355 - AO353_00675 0.60 -0.5 143,355 - AO353_00675 0.60 -1.0 143,355 - AO353_00675 0.60 -2.4 143,355 - AO353_00675 0.60 -2.2 143,515 + AO353_00675 0.86 +0.7 143,516 - AO353_00675 0.87 -0.5 143,614 + -2.1 143,614 + -0.5 143,614 + -0.7 143,614 + +1.3 143,615 - -0.4 143,615 - +0.5 143,615 - -1.3 143,632 + -0.0 143,633 - +1.8 143,633 - +0.3 143,634 + +0.5 143,634 + -0.6 143,748 + +0.3 143,748 + +0.1 143,749 - -0.3 143,780 - +0.5
Or see this region's nucleotide sequence