Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000829

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000828 and ABIE53_000829 are separated by 18 nucleotidesABIE53_000829 and ABIE53_000830 are separated by 116 nucleotidesABIE53_000830 and ABIE53_000831 are separated by 181 nucleotides ABIE53_000828: ABIE53_000828 - preprotein translocase subunit SecF, at 897,027 to 897,977 _000828 ABIE53_000829: ABIE53_000829 - preprotein translocase subunit SecD, at 897,996 to 900,071 _000829 ABIE53_000830: ABIE53_000830 - preprotein translocase subunit YajC, at 900,188 to 900,520 _000830 ABIE53_000831: ABIE53_000831 - queuine tRNA-ribosyltransferase, at 900,702 to 901,895 _000831 Position (kb) 897 898 899 900 901Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 897.014 kb on + strandat 897.014 kb on + strandat 897.014 kb on + strandat 897.015 kb on - strandat 897.015 kb on - strandat 897.018 kb on + strandat 897.018 kb on + strandat 897.018 kb on + strandat 897.018 kb on + strandat 897.019 kb on - strandat 900.141 kb on - strandat 900.141 kb on - strandat 900.190 kb on - strandat 900.190 kb on - strandat 900.190 kb on - strandat 900.190 kb on - strandat 900.190 kb on - strandat 900.283 kb on - strand, within ABIE53_000830at 900.283 kb on - strand, within ABIE53_000830at 900.283 kb on - strand, within ABIE53_000830at 900.536 kb on - strandat 900.538 kb on - strandat 900.538 kb on - strandat 900.538 kb on - strandat 900.538 kb on - strandat 900.538 kb on - strandat 900.574 kb on - strandat 900.574 kb on - strandat 900.627 kb on + strandat 900.628 kb on - strandat 900.628 kb on - strandat 900.628 kb on - strandat 900.662 kb on + strandat 900.663 kb on - strandat 900.663 kb on - strandat 900.708 kb on + strandat 900.708 kb on + strandat 900.708 kb on + strandat 900.709 kb on - strandat 900.709 kb on - strandat 900.709 kb on - strandat 900.709 kb on - strandat 900.828 kb on + strand, within ABIE53_000831at 900.828 kb on + strand, within ABIE53_000831at 900.828 kb on + strand, within ABIE53_000831at 900.829 kb on - strand, within ABIE53_000831at 900.829 kb on - strand, within ABIE53_000831at 900.829 kb on - strand, within ABIE53_000831at 900.831 kb on + strand, within ABIE53_000831at 900.831 kb on + strand, within ABIE53_000831at 900.831 kb on + strand, within ABIE53_000831at 900.832 kb on - strand, within ABIE53_000831at 900.832 kb on - strand, within ABIE53_000831at 900.832 kb on - strand, within ABIE53_000831at 900.832 kb on - strand, within ABIE53_000831at 900.851 kb on - strand, within ABIE53_000831at 900.900 kb on + strand, within ABIE53_000831at 900.901 kb on - strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.925 kb on + strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.926 kb on - strand, within ABIE53_000831at 900.928 kb on - strand, within ABIE53_000831at 900.928 kb on - strand, within ABIE53_000831at 900.928 kb on - strand, within ABIE53_000831at 900.928 kb on - strand, within ABIE53_000831at 900.928 kb on - strand, within ABIE53_000831at 901.007 kb on + strand, within ABIE53_000831

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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897,014 + +1.2
897,014 + +0.8
897,014 + -2.2
897,015 - -0.3
897,015 - -0.1
897,018 + +0.0
897,018 + +0.5
897,018 + -0.8
897,018 + +0.0
897,019 - -0.2
900,141 - -0.1
900,141 - -1.1
900,190 - +0.3
900,190 - +0.4
900,190 - -0.5
900,190 - +0.2
900,190 - -0.9
900,283 - ABIE53_000830 0.29 -2.4
900,283 - ABIE53_000830 0.29 -5.1
900,283 - ABIE53_000830 0.29 +0.0
900,536 - -0.2
900,538 - -1.0
900,538 - -0.5
900,538 - -0.3
900,538 - +0.8
900,538 - -0.3
900,574 - -0.4
900,574 - +0.7
900,627 + +1.2
900,628 - +1.3
900,628 - -1.2
900,628 - -0.8
900,662 + -0.3
900,663 - +0.1
900,663 - -0.3
900,708 + -0.1
900,708 + -0.6
900,708 + +0.0
900,709 - -0.2
900,709 - +0.6
900,709 - -0.7
900,709 - -1.4
900,828 + ABIE53_000831 0.11 -0.0
900,828 + ABIE53_000831 0.11 +2.4
900,828 + ABIE53_000831 0.11 -0.2
900,829 - ABIE53_000831 0.11 +0.2
900,829 - ABIE53_000831 0.11 +1.8
900,829 - ABIE53_000831 0.11 +1.6
900,831 + ABIE53_000831 0.11 +0.7
900,831 + ABIE53_000831 0.11 +0.2
900,831 + ABIE53_000831 0.11 -0.2
900,832 - ABIE53_000831 0.11 +0.2
900,832 - ABIE53_000831 0.11 +0.3
900,832 - ABIE53_000831 0.11 +0.8
900,832 - ABIE53_000831 0.11 +2.2
900,851 - ABIE53_000831 0.12 +0.8
900,900 + ABIE53_000831 0.17 -0.8
900,901 - ABIE53_000831 0.17 +0.7
900,925 + ABIE53_000831 0.19 +0.6
900,925 + ABIE53_000831 0.19 -1.2
900,925 + ABIE53_000831 0.19 -0.2
900,925 + ABIE53_000831 0.19 -0.7
900,925 + ABIE53_000831 0.19 +0.1
900,925 + ABIE53_000831 0.19 +1.2
900,925 + ABIE53_000831 0.19 +1.2
900,925 + ABIE53_000831 0.19 -0.5
900,925 + ABIE53_000831 0.19 +0.2
900,925 + ABIE53_000831 0.19 +0.5
900,925 + ABIE53_000831 0.19 -0.3
900,925 + ABIE53_000831 0.19 -0.6
900,925 + ABIE53_000831 0.19 +0.5
900,925 + ABIE53_000831 0.19 -0.7
900,925 + ABIE53_000831 0.19 +0.6
900,926 - ABIE53_000831 0.19 -0.8
900,926 - ABIE53_000831 0.19 -0.4
900,926 - ABIE53_000831 0.19 -0.0
900,926 - ABIE53_000831 0.19 +1.9
900,926 - ABIE53_000831 0.19 +0.6
900,926 - ABIE53_000831 0.19 +0.5
900,926 - ABIE53_000831 0.19 -0.2
900,926 - ABIE53_000831 0.19 -1.5
900,926 - ABIE53_000831 0.19 +0.2
900,926 - ABIE53_000831 0.19 +1.2
900,926 - ABIE53_000831 0.19 -0.2
900,926 - ABIE53_000831 0.19 +0.0
900,928 - ABIE53_000831 0.19 +0.3
900,928 - ABIE53_000831 0.19 +0.3
900,928 - ABIE53_000831 0.19 -0.3
900,928 - ABIE53_000831 0.19 -0.7
900,928 - ABIE53_000831 0.19 +0.0
901,007 + ABIE53_000831 0.26 -0.5

Or see this region's nucleotide sequence