Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2556

Experiment: MoYLS4 with Chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2555 and DvMF_2556 are separated by 95 nucleotidesDvMF_2556 and DvMF_2557 are separated by 20 nucleotides DvMF_2555: DvMF_2555 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,229,034 to 3,230,371 _2555 DvMF_2556: DvMF_2556 - hypothetical protein (RefSeq), at 3,230,467 to 3,231,126 _2556 DvMF_2557: DvMF_2557 - hypothetical protein (RefSeq), at 3,231,147 to 3,232,502 _2557 Position (kb) 3230 3231 3232Strain fitness (log2 ratio) -1 0 1at 3229.620 kb on + strand, within DvMF_2555at 3229.653 kb on + strand, within DvMF_2555at 3229.691 kb on - strand, within DvMF_2555at 3229.700 kb on - strand, within DvMF_2555at 3229.808 kb on - strand, within DvMF_2555at 3229.991 kb on + strand, within DvMF_2555at 3230.004 kb on + strand, within DvMF_2555at 3230.005 kb on - strand, within DvMF_2555at 3230.012 kb on - strand, within DvMF_2555at 3230.074 kb on + strand, within DvMF_2555at 3230.132 kb on + strand, within DvMF_2555at 3230.309 kb on - strandat 3230.455 kb on - strandat 3230.510 kb on + strandat 3230.568 kb on - strand, within DvMF_2556at 3230.880 kb on - strand, within DvMF_2556at 3230.975 kb on + strand, within DvMF_2556at 3231.083 kb on + strandat 3231.083 kb on + strandat 3231.161 kb on + strandat 3231.161 kb on + strandat 3231.205 kb on + strandat 3231.366 kb on + strand, within DvMF_2557at 3231.634 kb on + strand, within DvMF_2557at 3231.676 kb on + strand, within DvMF_2557at 3231.746 kb on - strand, within DvMF_2557at 3231.836 kb on + strand, within DvMF_2557at 3231.842 kb on + strand, within DvMF_2557at 3231.852 kb on - strand, within DvMF_2557at 3231.852 kb on - strand, within DvMF_2557at 3231.964 kb on - strand, within DvMF_2557

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM
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3,229,620 + DvMF_2555 0.44 +0.7
3,229,653 + DvMF_2555 0.46 +1.0
3,229,691 - DvMF_2555 0.49 +0.9
3,229,700 - DvMF_2555 0.50 +0.6
3,229,808 - DvMF_2555 0.58 +0.8
3,229,991 + DvMF_2555 0.72 +0.4
3,230,004 + DvMF_2555 0.72 +0.7
3,230,005 - DvMF_2555 0.73 +0.9
3,230,012 - DvMF_2555 0.73 +0.7
3,230,074 + DvMF_2555 0.78 +0.7
3,230,132 + DvMF_2555 0.82 +0.8
3,230,309 - +1.1
3,230,455 - -0.0
3,230,510 + +0.8
3,230,568 - DvMF_2556 0.15 +0.7
3,230,880 - DvMF_2556 0.63 +0.9
3,230,975 + DvMF_2556 0.77 +0.7
3,231,083 + +0.8
3,231,083 + +0.7
3,231,161 + +1.1
3,231,161 + +1.1
3,231,205 + +0.8
3,231,366 + DvMF_2557 0.16 +1.1
3,231,634 + DvMF_2557 0.36 +0.9
3,231,676 + DvMF_2557 0.39 +0.9
3,231,746 - DvMF_2557 0.44 +1.0
3,231,836 + DvMF_2557 0.51 +1.2
3,231,842 + DvMF_2557 0.51 +1.0
3,231,852 - DvMF_2557 0.52 +1.0
3,231,852 - DvMF_2557 0.52 +1.0
3,231,964 - DvMF_2557 0.60 +1.1

Or see this region's nucleotide sequence