Experiment: MoYLS4 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2552 and DvMF_2553 are separated by 5 nucleotides DvMF_2553 and DvMF_2554 are separated by 85 nucleotides DvMF_2554 and DvMF_2555 are separated by 20 nucleotides
DvMF_2552: DvMF_2552 - UspA domain protein (RefSeq), at 3,226,974 to 3,227,891
_2552
DvMF_2553: DvMF_2553 - hypothetical protein (RefSeq), at 3,227,897 to 3,228,463
_2553
DvMF_2554: DvMF_2554 - acidic cytochrome c3 (RefSeq), at 3,228,549 to 3,229,013
_2554
DvMF_2555: DvMF_2555 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,229,034 to 3,230,371
_2555
Position (kb)
3228
3229
3230 Strain fitness (log2 ratio)
-1
0
1 at 3227.603 kb on - strand, within DvMF_2552 at 3227.603 kb on - strand, within DvMF_2552 at 3227.788 kb on + strand, within DvMF_2552 at 3228.056 kb on + strand, within DvMF_2553 at 3228.064 kb on - strand, within DvMF_2553 at 3228.099 kb on + strand, within DvMF_2553 at 3228.214 kb on + strand, within DvMF_2553 at 3228.222 kb on - strand, within DvMF_2553 at 3228.285 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.351 kb on + strand, within DvMF_2553 at 3228.702 kb on - strand, within DvMF_2554 at 3228.801 kb on - strand, within DvMF_2554 at 3229.232 kb on - strand, within DvMF_2555 at 3229.319 kb on - strand, within DvMF_2555 at 3229.620 kb on + strand, within DvMF_2555 at 3229.653 kb on + strand, within DvMF_2555 at 3229.691 kb on - strand, within DvMF_2555 at 3229.700 kb on - strand, within DvMF_2555 at 3229.808 kb on - strand, within DvMF_2555 at 3229.991 kb on + strand, within DvMF_2555 at 3230.004 kb on + strand, within DvMF_2555 at 3230.005 kb on - strand, within DvMF_2555 at 3230.012 kb on - strand, within DvMF_2555
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM remove 3,227,603 - DvMF_2552 0.69 -0.1 3,227,603 - DvMF_2552 0.69 -0.2 3,227,788 + DvMF_2552 0.89 +0.3 3,228,056 + DvMF_2553 0.28 +0.5 3,228,064 - DvMF_2553 0.29 +1.1 3,228,099 + DvMF_2553 0.36 +0.2 3,228,214 + DvMF_2553 0.56 +0.2 3,228,222 - DvMF_2553 0.57 -0.2 3,228,285 + DvMF_2553 0.68 +0.2 3,228,295 + DvMF_2553 0.70 +0.2 3,228,295 + DvMF_2553 0.70 +0.1 3,228,351 + DvMF_2553 0.80 +0.2 3,228,702 - DvMF_2554 0.33 +0.2 3,228,801 - DvMF_2554 0.54 +0.9 3,229,232 - DvMF_2555 0.15 +0.9 3,229,319 - DvMF_2555 0.21 +0.9 3,229,620 + DvMF_2555 0.44 +0.7 3,229,653 + DvMF_2555 0.46 +1.0 3,229,691 - DvMF_2555 0.49 +0.9 3,229,700 - DvMF_2555 0.50 +0.6 3,229,808 - DvMF_2555 0.58 +0.8 3,229,991 + DvMF_2555 0.72 +0.4 3,230,004 + DvMF_2555 0.72 +0.7 3,230,005 - DvMF_2555 0.73 +0.9 3,230,012 - DvMF_2555 0.73 +0.7
Or see this region's nucleotide sequence