Experiment: MoYLS4 with Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1623 and DvMF_1624 are separated by 286 nucleotides DvMF_1624 and DvMF_1625 overlap by 20 nucleotides
DvMF_1623: DvMF_1623 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,001,338 to 2,001,949
_1623
DvMF_1624: DvMF_1624 - two component transcriptional regulator, winged helix family (RefSeq), at 2,002,236 to 2,003,072
_1624
DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765
_1625
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-1
0
1 at 2001.369 kb on + strand at 2001.396 kb on + strand at 2001.447 kb on + strand, within DvMF_1623 at 2001.678 kb on - strand, within DvMF_1623 at 2001.694 kb on + strand, within DvMF_1623 at 2001.701 kb on + strand, within DvMF_1623 at 2001.747 kb on - strand, within DvMF_1623 at 2001.788 kb on - strand, within DvMF_1623 at 2002.422 kb on - strand, within DvMF_1624 at 2002.467 kb on - strand, within DvMF_1624 at 2002.675 kb on + strand, within DvMF_1624 at 2002.751 kb on - strand, within DvMF_1624 at 2002.769 kb on - strand, within DvMF_1624 at 2002.854 kb on + strand, within DvMF_1624 at 2002.860 kb on - strand, within DvMF_1624 at 2002.860 kb on - strand, within DvMF_1624 at 2003.068 kb on + strand at 2003.344 kb on - strand, within DvMF_1625 at 2003.725 kb on - strand, within DvMF_1625 at 2003.735 kb on - strand, within DvMF_1625 at 2003.746 kb on - strand, within DvMF_1625 at 2003.812 kb on + strand, within DvMF_1625 at 2003.820 kb on - strand, within DvMF_1625 at 2003.846 kb on - strand, within DvMF_1625 at 2003.884 kb on - strand, within DvMF_1625 at 2003.966 kb on - strand, within DvMF_1625 at 2003.989 kb on - strand, within DvMF_1625
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM remove 2,001,369 + -0.1 2,001,396 + -1.5 2,001,447 + DvMF_1623 0.18 -0.7 2,001,678 - DvMF_1623 0.56 -0.2 2,001,694 + DvMF_1623 0.58 -0.2 2,001,701 + DvMF_1623 0.59 -0.2 2,001,747 - DvMF_1623 0.67 -0.3 2,001,788 - DvMF_1623 0.74 -0.2 2,002,422 - DvMF_1624 0.22 -0.4 2,002,467 - DvMF_1624 0.28 -0.3 2,002,675 + DvMF_1624 0.52 -0.9 2,002,751 - DvMF_1624 0.62 -0.4 2,002,769 - DvMF_1624 0.64 -0.4 2,002,854 + DvMF_1624 0.74 -0.4 2,002,860 - DvMF_1624 0.75 +0.3 2,002,860 - DvMF_1624 0.75 -0.0 2,003,068 + -0.5 2,003,344 - DvMF_1625 0.17 +0.4 2,003,725 - DvMF_1625 0.39 -0.1 2,003,735 - DvMF_1625 0.40 -0.5 2,003,746 - DvMF_1625 0.40 -0.1 2,003,812 + DvMF_1625 0.44 -0.3 2,003,820 - DvMF_1625 0.45 -0.6 2,003,846 - DvMF_1625 0.46 -0.3 2,003,884 - DvMF_1625 0.49 +0.2 2,003,966 - DvMF_1625 0.53 -0.6 2,003,989 - DvMF_1625 0.55 -0.4
Or see this region's nucleotide sequence