Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1099

Experiment: MoYLS4 with Chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1098 and DvMF_1099 are separated by 121 nucleotidesDvMF_1099 and DvMF_1100 are separated by 18 nucleotides DvMF_1098: DvMF_1098 - glycosyl transferase group 1 (RefSeq), at 1,344,215 to 1,345,441 _1098 DvMF_1099: DvMF_1099 - drug resistance transporter, EmrB/QacA subfamily (RefSeq), at 1,345,563 to 1,347,122 _1099 DvMF_1100: DvMF_1100 - secretion protein HlyD family protein (RefSeq), at 1,347,141 to 1,348,472 _1100 Position (kb) 1345 1346 1347 1348Strain fitness (log2 ratio) -3 -2 -1 0 1at 1344.593 kb on - strand, within DvMF_1098at 1344.609 kb on - strand, within DvMF_1098at 1344.641 kb on + strand, within DvMF_1098at 1344.801 kb on - strand, within DvMF_1098at 1344.913 kb on + strand, within DvMF_1098at 1344.957 kb on + strand, within DvMF_1098at 1345.073 kb on - strand, within DvMF_1098at 1345.128 kb on - strand, within DvMF_1098at 1345.386 kb on + strandat 1345.423 kb on - strandat 1345.583 kb on - strandat 1345.801 kb on + strand, within DvMF_1099at 1346.007 kb on + strand, within DvMF_1099at 1346.363 kb on + strand, within DvMF_1099at 1346.501 kb on - strand, within DvMF_1099at 1346.575 kb on + strand, within DvMF_1099at 1346.577 kb on - strand, within DvMF_1099at 1346.577 kb on - strand, within DvMF_1099at 1346.854 kb on - strand, within DvMF_1099at 1347.268 kb on - strandat 1347.319 kb on - strand, within DvMF_1100at 1347.423 kb on - strand, within DvMF_1100at 1347.524 kb on - strand, within DvMF_1100at 1347.618 kb on - strand, within DvMF_1100at 1347.817 kb on + strand, within DvMF_1100

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM
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1,344,593 - DvMF_1098 0.31 -2.2
1,344,609 - DvMF_1098 0.32 -0.9
1,344,641 + DvMF_1098 0.35 -3.1
1,344,801 - DvMF_1098 0.48 -0.8
1,344,913 + DvMF_1098 0.57 -1.4
1,344,957 + DvMF_1098 0.60 -1.0
1,345,073 - DvMF_1098 0.70 -1.1
1,345,128 - DvMF_1098 0.74 -1.7
1,345,386 + -0.1
1,345,423 - -1.5
1,345,583 - -0.9
1,345,801 + DvMF_1099 0.15 -1.2
1,346,007 + DvMF_1099 0.28 -1.2
1,346,363 + DvMF_1099 0.51 -1.5
1,346,501 - DvMF_1099 0.60 -1.0
1,346,575 + DvMF_1099 0.65 -1.1
1,346,577 - DvMF_1099 0.65 -1.7
1,346,577 - DvMF_1099 0.65 -0.8
1,346,854 - DvMF_1099 0.83 -1.2
1,347,268 - -1.1
1,347,319 - DvMF_1100 0.13 -0.1
1,347,423 - DvMF_1100 0.21 -1.2
1,347,524 - DvMF_1100 0.29 -1.2
1,347,618 - DvMF_1100 0.36 -0.8
1,347,817 + DvMF_1100 0.51 -1.4

Or see this region's nucleotide sequence