Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0922

Experiment: MoYLS4 with Chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0920 and DvMF_0921 overlap by 4 nucleotidesDvMF_0921 and DvMF_0922 are separated by 3 nucleotidesDvMF_0922 and DvMF_0923 are separated by 13 nucleotides DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041 _0920 DvMF_0921: DvMF_0921 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,113,038 to 1,113,892 _0921 DvMF_0922: DvMF_0922 - hypothetical protein (RefSeq), at 1,113,896 to 1,115,659 _0922 DvMF_0923: DvMF_0923 - SMC domain protein (RefSeq), at 1,115,673 to 1,117,325 _0923 Position (kb) 1113 1114 1115 1116Strain fitness (log2 ratio) -1 0 1at 1113.063 kb on - strandat 1113.105 kb on + strandat 1113.406 kb on + strand, within DvMF_0921at 1113.540 kb on + strand, within DvMF_0921at 1113.695 kb on + strand, within DvMF_0921at 1113.703 kb on - strand, within DvMF_0921at 1113.728 kb on + strand, within DvMF_0921at 1114.103 kb on - strand, within DvMF_0922at 1114.203 kb on - strand, within DvMF_0922at 1114.203 kb on - strand, within DvMF_0922at 1114.285 kb on - strand, within DvMF_0922at 1114.515 kb on + strand, within DvMF_0922at 1114.592 kb on - strand, within DvMF_0922at 1114.623 kb on + strand, within DvMF_0922at 1114.706 kb on + strand, within DvMF_0922at 1114.791 kb on - strand, within DvMF_0922at 1115.085 kb on + strand, within DvMF_0922at 1115.315 kb on - strand, within DvMF_0922at 1115.393 kb on + strand, within DvMF_0922at 1115.489 kb on + strandat 1115.653 kb on + strandat 1115.772 kb on + strandat 1116.266 kb on + strand, within DvMF_0923at 1116.351 kb on - strand, within DvMF_0923at 1116.360 kb on + strand, within DvMF_0923

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM
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1,113,063 - -0.5
1,113,105 + -0.3
1,113,406 + DvMF_0921 0.43 -0.6
1,113,540 + DvMF_0921 0.59 +0.3
1,113,695 + DvMF_0921 0.77 -0.8
1,113,703 - DvMF_0921 0.78 -1.0
1,113,728 + DvMF_0921 0.81 -0.3
1,114,103 - DvMF_0922 0.12 -0.1
1,114,203 - DvMF_0922 0.17 -0.4
1,114,203 - DvMF_0922 0.17 -0.5
1,114,285 - DvMF_0922 0.22 -0.6
1,114,515 + DvMF_0922 0.35 -0.1
1,114,592 - DvMF_0922 0.39 -0.5
1,114,623 + DvMF_0922 0.41 -0.7
1,114,706 + DvMF_0922 0.46 +0.2
1,114,791 - DvMF_0922 0.51 -0.8
1,115,085 + DvMF_0922 0.67 -0.4
1,115,315 - DvMF_0922 0.80 -0.1
1,115,393 + DvMF_0922 0.85 -0.9
1,115,489 + +0.4
1,115,653 + -0.0
1,115,772 + -0.6
1,116,266 + DvMF_0923 0.36 -0.4
1,116,351 - DvMF_0923 0.41 -0.1
1,116,360 + DvMF_0923 0.42 -0.6

Or see this region's nucleotide sequence