Experiment: Darkness for 72h then Flask growth in 60 uE constant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1899 and dcd are separated by 53 nucleotides dcd and Synpcc7942_1901 are separated by 44 nucleotides Synpcc7942_1901 and Synpcc7942_1902 are separated by 92 nucleotides
Synpcc7942_1899: Synpcc7942_1899 - hypothetical protein, at 1,972,290 to 1,972,778
_1899
Synpcc7942_1900: dcd - deoxycytidine triphosphate deaminase, at 1,972,832 to 1,973,413
dcd
Synpcc7942_1901: Synpcc7942_1901 - putative glycosyltransferase, at 1,973,458 to 1,975,839
_1901
Synpcc7942_1902: Synpcc7942_1902 - putative glycosyltransferase, at 1,975,932 to 1,976,978
_1902
Position (kb) 1973
1974
1975
1976 Strain fitness (log2 ratio) -1
0
1 at 1972.481 kb on - strand, within Synpcc7942_1899 at 1972.488 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.495 kb on + strand, within Synpcc7942_1899 at 1972.498 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.536 kb on - strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.551 kb on + strand, within Synpcc7942_1899 at 1972.554 kb on - strand, within Synpcc7942_1899 at 1972.566 kb on - strand, within Synpcc7942_1899 at 1972.642 kb on - strand, within Synpcc7942_1899 at 1972.661 kb on - strand, within Synpcc7942_1899 at 1972.676 kb on + strand, within Synpcc7942_1899 at 1972.677 kb on - strand, within Synpcc7942_1899 at 1972.742 kb on - strand at 1972.747 kb on + strand at 1972.762 kb on + strand at 1972.762 kb on - strand at 1972.762 kb on - strand at 1972.770 kb on - strand at 1972.809 kb on - strand at 1973.397 kb on + strand at 1973.407 kb on + strand at 1973.407 kb on + strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.494 kb on - strand at 1973.867 kb on - strand, within Synpcc7942_1901 at 1974.301 kb on - strand, within Synpcc7942_1901 at 1974.681 kb on + strand, within Synpcc7942_1901 at 1975.923 kb on - strand at 1976.080 kb on - strand, within Synpcc7942_1902 at 1976.664 kb on - strand, within Synpcc7942_1902 at 1976.675 kb on + strand, within Synpcc7942_1902
Per-strain Table
Position Strand Gene LocusTag Fraction Darkness for 72h then Flask growth in 60 uE constant light remove 1,972,481 - Synpcc7942_1899 0.39 -0.3 1,972,488 + Synpcc7942_1899 0.40 +0.1 1,972,490 + Synpcc7942_1899 0.41 -0.4 1,972,490 + Synpcc7942_1899 0.41 -0.0 1,972,495 + Synpcc7942_1899 0.42 +0.4 1,972,498 - Synpcc7942_1899 0.43 -0.7 1,972,521 - Synpcc7942_1899 0.47 -0.5 1,972,521 - Synpcc7942_1899 0.47 +0.3 1,972,523 + Synpcc7942_1899 0.48 -0.0 1,972,523 + Synpcc7942_1899 0.48 +0.5 1,972,523 + Synpcc7942_1899 0.48 +0.8 1,972,531 - Synpcc7942_1899 0.49 -0.6 1,972,531 - Synpcc7942_1899 0.49 -0.9 1,972,531 - Synpcc7942_1899 0.49 -1.3 1,972,531 - Synpcc7942_1899 0.49 -0.5 1,972,536 - Synpcc7942_1899 0.50 +0.3 1,972,546 + Synpcc7942_1899 0.52 -0.5 1,972,546 + Synpcc7942_1899 0.52 -0.2 1,972,551 + Synpcc7942_1899 0.53 -0.5 1,972,554 - Synpcc7942_1899 0.54 +0.1 1,972,566 - Synpcc7942_1899 0.56 +0.1 1,972,642 - Synpcc7942_1899 0.72 +0.6 1,972,661 - Synpcc7942_1899 0.76 +0.2 1,972,676 + Synpcc7942_1899 0.79 -0.1 1,972,677 - Synpcc7942_1899 0.79 -0.1 1,972,742 - +1.4 1,972,747 + -0.3 1,972,762 + +0.1 1,972,762 - +1.0 1,972,762 - -0.2 1,972,770 - -0.1 1,972,809 - +0.4 1,973,397 + +0.3 1,973,407 + -0.0 1,973,407 + -0.2 1,973,415 - +0.2 1,973,415 - -1.4 1,973,415 - -0.6 1,973,494 - -0.2 1,973,867 - Synpcc7942_1901 0.17 -0.6 1,974,301 - Synpcc7942_1901 0.35 -0.6 1,974,681 + Synpcc7942_1901 0.51 -1.7 1,975,923 - -0.2 1,976,080 - Synpcc7942_1902 0.14 -0.8 1,976,664 - Synpcc7942_1902 0.70 -0.5 1,976,675 + Synpcc7942_1902 0.71 -1.1
Or see this region's nucleotide sequence