Experiment: Darkness for 72h then Flask growth in 60 uE constant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0341 and Synpcc7942_0342 are separated by 157 nucleotides Synpcc7942_0342 and psb27 are separated by 63 nucleotides psb27 and Synpcc7942_0344 are separated by 352 nucleotides
Synpcc7942_0341: Synpcc7942_0341 - hypothetical protein, at 335,633 to 336,205
_0341
Synpcc7942_0342: Synpcc7942_0342 - hypothetical protein, at 336,363 to 336,590
_0342
Synpcc7942_0343: psb27 - photosystem II 11 kD protein, at 336,654 to 337,055
psb27
Synpcc7942_0344: Synpcc7942_0344 - probable peptidase, at 337,408 to 338,451
_0344
Position (kb) 336
337
338 Strain fitness (log2 ratio) -1
0
1 at 335.660 kb on + strand at 335.770 kb on - strand, within Synpcc7942_0341 at 335.809 kb on + strand, within Synpcc7942_0341 at 335.928 kb on + strand, within Synpcc7942_0341 at 335.937 kb on - strand, within Synpcc7942_0341 at 335.961 kb on + strand, within Synpcc7942_0341 at 335.969 kb on - strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.988 kb on - strand, within Synpcc7942_0341 at 336.029 kb on - strand, within Synpcc7942_0341 at 336.032 kb on + strand, within Synpcc7942_0341 at 336.038 kb on + strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.149 kb on - strand at 336.185 kb on + strand at 336.204 kb on + strand at 336.207 kb on - strand at 336.212 kb on + strand at 336.262 kb on + strand at 336.262 kb on + strand at 336.270 kb on - strand at 336.304 kb on + strand at 336.312 kb on - strand at 336.312 kb on - strand at 336.345 kb on + strand at 336.345 kb on + strand at 336.345 kb on + strand at 336.350 kb on + strand at 336.353 kb on - strand at 336.353 kb on - strand at 336.353 kb on - strand at 336.365 kb on + strand at 336.366 kb on + strand at 336.373 kb on - strand at 336.395 kb on + strand, within Synpcc7942_0342 at 336.395 kb on + strand, within Synpcc7942_0342 at 336.395 kb on + strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.405 kb on + strand, within Synpcc7942_0342 at 336.425 kb on - strand, within Synpcc7942_0342 at 336.452 kb on + strand, within Synpcc7942_0342 at 336.468 kb on + strand, within Synpcc7942_0342 at 336.498 kb on + strand, within Synpcc7942_0342 at 336.504 kb on + strand, within Synpcc7942_0342 at 336.506 kb on - strand, within Synpcc7942_0342 at 336.512 kb on - strand, within Synpcc7942_0342 at 336.544 kb on - strand, within Synpcc7942_0342 at 336.544 kb on - strand, within Synpcc7942_0342 at 336.563 kb on - strand, within Synpcc7942_0342 at 336.590 kb on + strand at 336.640 kb on + strand at 336.769 kb on - strand, within psb27 at 336.774 kb on + strand, within psb27 at 336.774 kb on + strand, within psb27 at 336.814 kb on - strand, within psb27 at 336.838 kb on + strand, within psb27 at 336.933 kb on + strand, within psb27 at 337.050 kb on + strand at 337.050 kb on + strand at 337.050 kb on + strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.101 kb on + strand at 337.107 kb on + strand at 337.200 kb on + strand at 337.200 kb on + strand at 337.200 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.222 kb on - strand at 337.224 kb on + strand at 337.236 kb on + strand at 337.245 kb on - strand at 337.249 kb on + strand at 337.257 kb on + strand at 337.257 kb on + strand at 337.327 kb on + strand at 337.364 kb on + strand at 337.405 kb on + strand at 337.405 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.413 kb on - strand at 337.420 kb on - strand at 337.431 kb on + strand at 337.442 kb on + strand at 337.486 kb on + strand at 337.489 kb on + strand at 337.540 kb on + strand, within Synpcc7942_0344 at 337.563 kb on - strand, within Synpcc7942_0344 at 337.593 kb on - strand, within Synpcc7942_0344 at 337.707 kb on + strand, within Synpcc7942_0344 at 337.719 kb on - strand, within Synpcc7942_0344 at 337.814 kb on + strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.846 kb on + strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.880 kb on + strand at 337.951 kb on - strand, within Synpcc7942_0344 at 337.958 kb on + strand, within Synpcc7942_0344 at 337.966 kb on - strand, within Synpcc7942_0344 at 337.980 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.017 kb on - strand, within Synpcc7942_0344 at 338.042 kb on - strand, within Synpcc7942_0344 at 338.046 kb on - strand, within Synpcc7942_0344
Per-strain Table
Position Strand Gene LocusTag Fraction Darkness for 72h then Flask growth in 60 uE constant light remove 335,660 + -1.0 335,770 - Synpcc7942_0341 0.24 +0.2 335,809 + Synpcc7942_0341 0.31 -0.2 335,928 + Synpcc7942_0341 0.51 +0.2 335,937 - Synpcc7942_0341 0.53 -0.6 335,961 + Synpcc7942_0341 0.57 +0.2 335,969 - Synpcc7942_0341 0.59 -0.5 335,980 + Synpcc7942_0341 0.61 -0.8 335,980 + Synpcc7942_0341 0.61 +0.4 335,988 - Synpcc7942_0341 0.62 -1.3 336,029 - Synpcc7942_0341 0.69 +0.1 336,032 + Synpcc7942_0341 0.70 +1.3 336,038 + Synpcc7942_0341 0.71 -0.4 336,041 - Synpcc7942_0341 0.71 -0.3 336,041 - Synpcc7942_0341 0.71 +0.1 336,041 - Synpcc7942_0341 0.71 -0.7 336,149 - +0.5 336,185 + +0.1 336,204 + +0.1 336,207 - -1.5 336,212 + -1.4 336,262 + +0.6 336,262 + +0.9 336,270 - -0.6 336,304 + -1.4 336,312 - -0.8 336,312 - +0.1 336,345 + +0.0 336,345 + -0.6 336,345 + +0.1 336,350 + +0.0 336,353 - +0.0 336,353 - +0.3 336,353 - +0.0 336,365 + +0.2 336,366 + +0.3 336,373 - +0.5 336,395 + Synpcc7942_0342 0.14 +0.0 336,395 + Synpcc7942_0342 0.14 -0.2 336,395 + Synpcc7942_0342 0.14 -0.2 336,403 - Synpcc7942_0342 0.18 +0.0 336,403 - Synpcc7942_0342 0.18 -1.0 336,403 - Synpcc7942_0342 0.18 -0.1 336,403 - Synpcc7942_0342 0.18 +0.0 336,405 + Synpcc7942_0342 0.18 +0.4 336,425 - Synpcc7942_0342 0.27 +0.3 336,452 + Synpcc7942_0342 0.39 +0.0 336,468 + Synpcc7942_0342 0.46 -0.4 336,498 + Synpcc7942_0342 0.59 -0.0 336,504 + Synpcc7942_0342 0.62 +0.3 336,506 - Synpcc7942_0342 0.63 +0.0 336,512 - Synpcc7942_0342 0.65 +0.5 336,544 - Synpcc7942_0342 0.79 -0.5 336,544 - Synpcc7942_0342 0.79 +0.4 336,563 - Synpcc7942_0342 0.88 -0.6 336,590 + +0.3 336,640 + +0.0 336,769 - psb27 Synpcc7942_0343 0.29 -1.1 336,774 + psb27 Synpcc7942_0343 0.30 +0.0 336,774 + psb27 Synpcc7942_0343 0.30 -1.1 336,814 - psb27 Synpcc7942_0343 0.40 -0.5 336,838 + psb27 Synpcc7942_0343 0.46 -1.5 336,933 + psb27 Synpcc7942_0343 0.69 -1.1 337,050 + -0.0 337,050 + -0.4 337,050 + +0.1 337,058 - +0.4 337,058 - -0.2 337,058 - +0.1 337,058 - +0.2 337,058 - -0.3 337,101 + +0.9 337,107 + -0.0 337,200 + +0.1 337,200 + +0.1 337,200 + -0.5 337,201 + -0.9 337,201 + +0.2 337,201 + -0.3 337,201 + -0.1 337,201 + +0.2 337,201 + -0.6 337,201 + -0.1 337,201 + -0.5 337,209 - -0.3 337,209 - -0.4 337,209 - +0.3 337,209 - +0.1 337,209 - +0.1 337,222 - -1.0 337,224 + +0.9 337,236 + -1.4 337,245 - -0.1 337,249 + -0.2 337,257 + +1.5 337,257 + +0.3 337,327 + +0.4 337,364 + -0.2 337,405 + +0.4 337,405 + +0.2 337,412 + +0.8 337,412 + +0.1 337,413 - +0.0 337,420 - -0.1 337,431 + -0.7 337,442 + -0.4 337,486 + -0.1 337,489 + -0.8 337,540 + Synpcc7942_0344 0.13 +0.3 337,563 - Synpcc7942_0344 0.15 +1.6 337,593 - Synpcc7942_0344 0.18 -1.5 337,707 + Synpcc7942_0344 0.29 -1.0 337,719 - Synpcc7942_0344 0.30 +0.3 337,814 + Synpcc7942_0344 0.39 -0.8 337,821 - Synpcc7942_0344 0.40 +0.2 337,821 - Synpcc7942_0344 0.40 +0.4 337,846 + Synpcc7942_0344 0.42 -0.1 337,854 - Synpcc7942_0344 0.43 +0.0 337,854 - Synpcc7942_0344 0.43 +1.1 337,870 + Synpcc7942_0344 0.44 +0.6 337,870 + Synpcc7942_0344 0.44 +0.3 337,880 + +0.9 337,951 - Synpcc7942_0344 0.52 -0.9 337,958 + Synpcc7942_0344 0.53 +0.3 337,966 - Synpcc7942_0344 0.53 -0.4 337,980 + Synpcc7942_0344 0.55 +0.0 338,009 + Synpcc7942_0344 0.58 +0.3 338,009 + Synpcc7942_0344 0.58 +0.2 338,017 - Synpcc7942_0344 0.58 +0.2 338,042 - Synpcc7942_0344 0.61 -0.4 338,046 - Synpcc7942_0344 0.61 -0.5
Or see this region's nucleotide sequence