Experiment: Darkness for 72h then Flask growth in 60 uE constant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0146 and Synpcc7942_0147 are separated by 303 nucleotides Synpcc7942_0147 and Synpcc7942_0148 are separated by 154 nucleotides Synpcc7942_0148 and Synpcc7942_0149 overlap by 4 nucleotides Synpcc7942_0149 and Synpcc7942_0150 are separated by 7 nucleotides
Synpcc7942_0146: Synpcc7942_0146 - hypothetical protein, at 147,160 to 147,855
_0146
Synpcc7942_0147: Synpcc7942_0147 - hypothetical protein, at 148,159 to 148,491
_0147
Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190
_0148
Synpcc7942_0149: Synpcc7942_0149 - methylated-DNA--protein-cysteine methyltransferase, at 150,187 to 150,744
_0149
Synpcc7942_0150: Synpcc7942_0150 - Dolichyl-phosphate beta-D-mannosyltransferase, at 150,752 to 151,918
_0150
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 147.654 kb on + strand, within Synpcc7942_0146 at 147.655 kb on + strand, within Synpcc7942_0146 at 147.681 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.688 kb on + strand, within Synpcc7942_0146 at 147.706 kb on - strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.726 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.759 kb on + strand, within Synpcc7942_0146 at 147.767 kb on - strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.770 kb on + strand, within Synpcc7942_0146 at 147.778 kb on + strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.778 kb on - strand, within Synpcc7942_0146 at 147.793 kb on + strand at 147.793 kb on + strand at 147.795 kb on - strand at 147.802 kb on - strand at 147.820 kb on + strand at 147.838 kb on + strand at 147.838 kb on + strand at 147.846 kb on - strand at 147.858 kb on - strand at 147.858 kb on - strand at 147.877 kb on - strand at 147.888 kb on + strand at 147.888 kb on + strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.896 kb on - strand at 147.897 kb on - strand at 147.925 kb on - strand at 147.938 kb on + strand at 147.940 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.955 kb on + strand at 147.957 kb on + strand at 147.965 kb on - strand at 147.981 kb on - strand at 148.016 kb on - strand at 148.032 kb on + strand at 148.040 kb on - strand at 148.047 kb on + strand at 148.047 kb on + strand at 148.049 kb on + strand at 148.055 kb on - strand at 148.060 kb on + strand at 148.078 kb on - strand at 148.080 kb on + strand at 148.080 kb on + strand at 148.089 kb on + strand at 148.103 kb on + strand at 148.103 kb on + strand at 148.111 kb on - strand at 148.135 kb on + strand at 148.143 kb on - strand at 148.150 kb on + strand at 148.158 kb on - strand at 148.194 kb on + strand, within Synpcc7942_0147 at 148.194 kb on + strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.201 kb on - strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on + strand, within Synpcc7942_0147 at 148.251 kb on - strand, within Synpcc7942_0147 at 148.253 kb on + strand, within Synpcc7942_0147 at 148.259 kb on + strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.259 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.261 kb on - strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.287 kb on + strand, within Synpcc7942_0147 at 148.292 kb on + strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.295 kb on - strand, within Synpcc7942_0147 at 148.304 kb on + strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.312 kb on - strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.317 kb on + strand, within Synpcc7942_0147 at 148.376 kb on - strand, within Synpcc7942_0147 at 148.381 kb on - strand, within Synpcc7942_0147 at 148.393 kb on - strand, within Synpcc7942_0147 at 148.394 kb on - strand, within Synpcc7942_0147 at 148.408 kb on - strand, within Synpcc7942_0147 at 148.415 kb on + strand, within Synpcc7942_0147 at 148.427 kb on - strand, within Synpcc7942_0147 at 148.439 kb on + strand, within Synpcc7942_0147 at 148.466 kb on + strand at 148.505 kb on - strand at 148.519 kb on + strand at 148.522 kb on - strand at 148.522 kb on - strand at 148.524 kb on + strand at 148.532 kb on - strand at 148.569 kb on - strand at 148.570 kb on - strand at 148.592 kb on + strand at 148.596 kb on - strand at 148.607 kb on - strand at 148.625 kb on + strand at 148.636 kb on + strand at 149.657 kb on - strand, within Synpcc7942_0148 at 149.718 kb on + strand, within Synpcc7942_0148 at 150.185 kb on - strand at 150.191 kb on - strand at 150.214 kb on + strand at 150.224 kb on - strand at 150.241 kb on + strand at 150.258 kb on - strand, within Synpcc7942_0149 at 150.265 kb on + strand, within Synpcc7942_0149 at 150.275 kb on - strand, within Synpcc7942_0149 at 150.330 kb on + strand, within Synpcc7942_0149 at 150.338 kb on - strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.365 kb on + strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.392 kb on + strand, within Synpcc7942_0149 at 150.435 kb on + strand, within Synpcc7942_0149 at 150.440 kb on + strand, within Synpcc7942_0149 at 150.464 kb on - strand, within Synpcc7942_0149 at 150.465 kb on + strand, within Synpcc7942_0149 at 150.487 kb on + strand, within Synpcc7942_0149 at 150.649 kb on + strand, within Synpcc7942_0149 at 150.664 kb on - strand, within Synpcc7942_0149 at 150.671 kb on - strand, within Synpcc7942_0149 at 150.679 kb on - strand, within Synpcc7942_0149 at 150.699 kb on + strand at 150.748 kb on + strand at 150.796 kb on - strand at 150.951 kb on + strand, within Synpcc7942_0150 at 151.019 kb on - strand, within Synpcc7942_0150 at 151.039 kb on + strand, within Synpcc7942_0150 at 151.045 kb on - strand, within Synpcc7942_0150 at 151.079 kb on + strand, within Synpcc7942_0150 at 151.135 kb on + strand, within Synpcc7942_0150 at 151.165 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.175 kb on - strand, within Synpcc7942_0150 at 151.183 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150
Per-strain Table
Position Strand Gene LocusTag Fraction Darkness for 72h then Flask growth in 60 uE constant light remove 147,654 + Synpcc7942_0146 0.71 +0.6 147,655 + Synpcc7942_0146 0.71 -0.1 147,681 + Synpcc7942_0146 0.75 +0.6 147,688 + Synpcc7942_0146 0.76 +0.5 147,688 + Synpcc7942_0146 0.76 -0.5 147,706 - Synpcc7942_0146 0.78 -0.6 147,726 + Synpcc7942_0146 0.81 -0.5 147,726 + Synpcc7942_0146 0.81 +0.1 147,759 + Synpcc7942_0146 0.86 +0.2 147,759 + Synpcc7942_0146 0.86 +0.4 147,767 - Synpcc7942_0146 0.87 -0.1 147,770 + Synpcc7942_0146 0.88 +0.3 147,770 + Synpcc7942_0146 0.88 +0.2 147,770 + Synpcc7942_0146 0.88 +0.9 147,770 + Synpcc7942_0146 0.88 -0.4 147,778 + Synpcc7942_0146 0.89 -0.4 147,778 - Synpcc7942_0146 0.89 -0.1 147,778 - Synpcc7942_0146 0.89 -0.6 147,793 + -0.4 147,793 + -0.4 147,795 - -1.4 147,802 - -0.6 147,820 + -0.1 147,838 + -0.1 147,838 + +0.5 147,846 - -0.1 147,858 - -0.3 147,858 - +0.1 147,877 - +0.4 147,888 + -0.0 147,888 + -0.2 147,896 - +0.5 147,896 - +0.3 147,896 - +0.9 147,896 - +0.1 147,896 - -0.5 147,897 - +0.3 147,925 - -0.9 147,938 + +0.2 147,940 + +0.2 147,955 + +0.3 147,955 + -0.6 147,955 + -0.8 147,957 + +0.6 147,965 - +0.0 147,981 - -0.0 148,016 - +0.1 148,032 + -0.2 148,040 - -0.5 148,047 + +0.5 148,047 + +0.8 148,049 + -0.2 148,055 - -0.6 148,060 + +0.4 148,078 - -0.3 148,080 + -0.7 148,080 + +0.5 148,089 + +0.8 148,103 + +0.6 148,103 + -0.7 148,111 - +0.5 148,135 + -0.1 148,143 - +0.8 148,150 + +0.7 148,158 - +0.1 148,194 + Synpcc7942_0147 0.11 +0.7 148,194 + Synpcc7942_0147 0.11 -0.2 148,201 - Synpcc7942_0147 0.13 +0.4 148,201 - Synpcc7942_0147 0.13 -0.3 148,201 - Synpcc7942_0147 0.13 +0.1 148,201 - Synpcc7942_0147 0.13 -0.4 148,201 - Synpcc7942_0147 0.13 +0.3 148,201 - Synpcc7942_0147 0.13 -0.8 148,251 + Synpcc7942_0147 0.28 +0.0 148,251 + Synpcc7942_0147 0.28 -0.1 148,251 + Synpcc7942_0147 0.28 +0.8 148,251 + Synpcc7942_0147 0.28 -0.1 148,251 + Synpcc7942_0147 0.28 -0.1 148,251 - Synpcc7942_0147 0.28 -1.2 148,253 + Synpcc7942_0147 0.28 -0.6 148,259 + Synpcc7942_0147 0.30 -0.5 148,259 - Synpcc7942_0147 0.30 -0.2 148,259 - Synpcc7942_0147 0.30 -0.0 148,259 - Synpcc7942_0147 0.30 -0.1 148,261 - Synpcc7942_0147 0.31 -0.0 148,261 - Synpcc7942_0147 0.31 +0.0 148,261 - Synpcc7942_0147 0.31 -0.1 148,287 + Synpcc7942_0147 0.38 -0.6 148,287 + Synpcc7942_0147 0.38 -0.4 148,287 + Synpcc7942_0147 0.38 +0.2 148,287 + Synpcc7942_0147 0.38 -0.0 148,292 + Synpcc7942_0147 0.40 +0.0 148,295 - Synpcc7942_0147 0.41 +0.6 148,295 - Synpcc7942_0147 0.41 +0.3 148,304 + Synpcc7942_0147 0.44 -0.2 148,312 - Synpcc7942_0147 0.46 +1.3 148,312 - Synpcc7942_0147 0.46 -0.1 148,317 + Synpcc7942_0147 0.47 +0.8 148,317 + Synpcc7942_0147 0.47 +0.3 148,376 - Synpcc7942_0147 0.65 -0.6 148,381 - Synpcc7942_0147 0.67 -0.4 148,393 - Synpcc7942_0147 0.70 +0.2 148,394 - Synpcc7942_0147 0.71 +0.6 148,408 - Synpcc7942_0147 0.75 -0.4 148,415 + Synpcc7942_0147 0.77 -0.4 148,427 - Synpcc7942_0147 0.80 -0.1 148,439 + Synpcc7942_0147 0.84 -0.4 148,466 + -0.2 148,505 - +0.4 148,519 + +0.2 148,522 - +0.4 148,522 - -0.3 148,524 + +0.4 148,532 - -0.6 148,569 - +0.0 148,570 - -0.1 148,592 + -0.4 148,596 - +0.2 148,607 - +0.2 148,625 + -0.3 148,636 + -0.6 149,657 - Synpcc7942_0148 0.65 -1.1 149,718 + Synpcc7942_0148 0.69 -1.2 150,185 - +0.4 150,191 - +1.3 150,214 + +0.2 150,224 - +0.4 150,241 + +0.3 150,258 - Synpcc7942_0149 0.13 -0.1 150,265 + Synpcc7942_0149 0.14 +0.0 150,275 - Synpcc7942_0149 0.16 -0.2 150,330 + Synpcc7942_0149 0.26 -0.4 150,338 - Synpcc7942_0149 0.27 -0.6 150,341 + Synpcc7942_0149 0.28 -1.2 150,341 + Synpcc7942_0149 0.28 +0.4 150,341 + Synpcc7942_0149 0.28 +1.7 150,341 + Synpcc7942_0149 0.28 +0.9 150,341 + Synpcc7942_0149 0.28 +0.0 150,341 + Synpcc7942_0149 0.28 -0.0 150,349 - Synpcc7942_0149 0.29 -0.0 150,349 - Synpcc7942_0149 0.29 +0.6 150,349 - Synpcc7942_0149 0.29 +0.4 150,349 - Synpcc7942_0149 0.29 -0.4 150,349 - Synpcc7942_0149 0.29 +0.8 150,349 - Synpcc7942_0149 0.29 +0.6 150,349 - Synpcc7942_0149 0.29 -0.2 150,349 - Synpcc7942_0149 0.29 -0.9 150,349 - Synpcc7942_0149 0.29 -0.2 150,349 - Synpcc7942_0149 0.29 -1.3 150,349 - Synpcc7942_0149 0.29 -0.4 150,365 + Synpcc7942_0149 0.32 -0.3 150,378 - Synpcc7942_0149 0.34 -0.6 150,378 - Synpcc7942_0149 0.34 +0.6 150,392 + Synpcc7942_0149 0.37 -1.2 150,435 + Synpcc7942_0149 0.44 +0.2 150,440 + Synpcc7942_0149 0.45 -0.1 150,464 - Synpcc7942_0149 0.50 +0.1 150,465 + Synpcc7942_0149 0.50 -0.2 150,487 + Synpcc7942_0149 0.54 +0.1 150,649 + Synpcc7942_0149 0.83 +0.2 150,664 - Synpcc7942_0149 0.85 +0.7 150,671 - Synpcc7942_0149 0.87 -0.2 150,679 - Synpcc7942_0149 0.88 +0.1 150,699 + -0.7 150,748 + -1.0 150,796 - -1.4 150,951 + Synpcc7942_0150 0.17 -3.0 151,019 - Synpcc7942_0150 0.23 -1.9 151,039 + Synpcc7942_0150 0.25 +0.4 151,045 - Synpcc7942_0150 0.25 -0.6 151,079 + Synpcc7942_0150 0.28 -1.1 151,135 + Synpcc7942_0150 0.33 +0.2 151,165 + Synpcc7942_0150 0.35 -2.5 151,167 + Synpcc7942_0150 0.36 -1.2 151,167 + Synpcc7942_0150 0.36 -1.3 151,167 + Synpcc7942_0150 0.36 -2.9 151,175 - Synpcc7942_0150 0.36 -2.1 151,183 - Synpcc7942_0150 0.37 -1.9 151,185 - Synpcc7942_0150 0.37 -2.2 151,185 - Synpcc7942_0150 0.37 -0.6 151,185 - Synpcc7942_0150 0.37 +0.1
Or see this region's nucleotide sequence