Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotides Pf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotides Pf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_747 and Pf6N2E2_748 are separated by 95 nucleotides
Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186
_744
Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668
_745
Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083
_746
Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986
_747
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 856.184 kb on + strand at 856.184 kb on + strand at 856.270 kb on + strand at 856.271 kb on - strand at 856.363 kb on + strand at 856.364 kb on - strand at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.659 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.675 kb on - strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.811 kb on - strand at 856.811 kb on - strand at 856.822 kb on - strand at 857.031 kb on - strand, within Pf6N2E2_746 at 857.043 kb on + strand, within Pf6N2E2_746 at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.082 kb on - strand at 857.082 kb on - strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.089 kb on - strand at 857.089 kb on - strand at 857.123 kb on + strand at 857.123 kb on + strand at 857.476 kb on - strand, within Pf6N2E2_747 at 857.707 kb on - strand, within Pf6N2E2_747 at 857.752 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.845 kb on - strand, within Pf6N2E2_747 at 857.980 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 856,184 + +0.6 856,184 + +0.3 856,270 + +0.5 856,271 - -0.1 856,363 + +0.1 856,364 - -0.3 856,433 + Pf6N2E2_745 0.26 -2.1 856,433 + Pf6N2E2_745 0.26 +0.6 856,433 + Pf6N2E2_745 0.26 -0.2 856,433 + Pf6N2E2_745 0.26 +0.1 856,433 + Pf6N2E2_745 0.26 -0.7 856,433 + Pf6N2E2_745 0.26 +0.5 856,433 + Pf6N2E2_745 0.26 -0.1 856,433 + Pf6N2E2_745 0.26 -0.6 856,434 - Pf6N2E2_745 0.26 +0.3 856,434 - Pf6N2E2_745 0.26 +0.3 856,434 - Pf6N2E2_745 0.26 +0.3 856,434 - Pf6N2E2_745 0.26 +1.3 856,659 + -0.2 856,674 + -0.8 856,674 + +0.1 856,674 + +0.4 856,675 - +0.3 856,794 + +0.2 856,794 + +1.3 856,794 + -0.0 856,794 + -0.4 856,795 - -0.2 856,795 - +0.4 856,795 - +0.6 856,795 - +0.7 856,811 - -0.6 856,811 - -0.2 856,822 - -0.4 857,031 - Pf6N2E2_746 0.79 -0.2 857,043 + Pf6N2E2_746 0.84 -0.5 857,081 + +0.5 857,081 + -0.7 857,081 + +1.2 857,081 + -0.2 857,081 + +0.5 857,081 + -0.0 857,082 - +0.8 857,082 - -0.2 857,088 + -0.1 857,088 + -0.3 857,088 + +0.0 857,089 - -1.7 857,089 - -0.7 857,123 + -0.0 857,123 + +0.8 857,476 - Pf6N2E2_747 0.43 -1.7 857,707 - Pf6N2E2_747 0.69 +0.9 857,752 + Pf6N2E2_747 0.74 +0.9 857,831 + Pf6N2E2_747 0.83 +0.0 857,831 + Pf6N2E2_747 0.83 +1.4 857,831 + Pf6N2E2_747 0.83 +0.2 857,831 + Pf6N2E2_747 0.83 -0.4 857,832 - Pf6N2E2_747 0.83 -0.2 857,832 - Pf6N2E2_747 0.83 +0.5 857,844 + Pf6N2E2_747 0.84 -0.4 857,844 + Pf6N2E2_747 0.84 +1.0 857,844 + Pf6N2E2_747 0.84 -0.2 857,845 - Pf6N2E2_747 0.84 +0.3 857,980 + +0.2
Or see this region's nucleotide sequence