Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_640 and Pf6N2E2_641 overlap by 34 nucleotides Pf6N2E2_641 and Pf6N2E2_642 are separated by 31 nucleotides Pf6N2E2_642 and Pf6N2E2_643 are separated by 167 nucleotides Pf6N2E2_643 and Pf6N2E2_644 overlap by 4 nucleotides
Pf6N2E2_640 - Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system, at 731,648 to 732,280
_640
Pf6N2E2_641 - Extracytoplasmic function (ECF) sigma factor VreI, at 732,247 to 732,822
_641
Pf6N2E2_642 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 732,854 to 733,801
_642
Pf6N2E2_643 - General secretion pathway protein J, at 733,969 to 734,580
_643
Pf6N2E2_644 - General secretion pathway protein H, at 734,577 to 735,029
_644
Position (kb) 732
733
734 Strain fitness (log2 ratio) -1
0
1
2 at 731.882 kb on + strand, within Pf6N2E2_640 at 731.975 kb on + strand, within Pf6N2E2_640 at 731.975 kb on + strand, within Pf6N2E2_640 at 731.976 kb on - strand, within Pf6N2E2_640 at 732.228 kb on + strand at 732.229 kb on - strand at 732.253 kb on - strand at 732.325 kb on + strand, within Pf6N2E2_641 at 732.326 kb on - strand, within Pf6N2E2_641 at 732.326 kb on - strand, within Pf6N2E2_641 at 732.401 kb on - strand, within Pf6N2E2_641 at 732.401 kb on - strand, within Pf6N2E2_641 at 732.454 kb on + strand, within Pf6N2E2_641 at 732.454 kb on + strand, within Pf6N2E2_641 at 732.454 kb on + strand, within Pf6N2E2_641 at 732.454 kb on + strand, within Pf6N2E2_641 at 732.454 kb on + strand, within Pf6N2E2_641 at 732.455 kb on - strand, within Pf6N2E2_641 at 732.477 kb on + strand, within Pf6N2E2_641 at 732.622 kb on + strand, within Pf6N2E2_641 at 732.623 kb on - strand, within Pf6N2E2_641 at 732.709 kb on - strand, within Pf6N2E2_641 at 733.517 kb on + strand, within Pf6N2E2_642 at 733.517 kb on + strand, within Pf6N2E2_642 at 733.518 kb on - strand, within Pf6N2E2_642 at 733.518 kb on - strand, within Pf6N2E2_642 at 733.927 kb on + strand at 733.970 kb on + strand at 733.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 731,882 + Pf6N2E2_640 0.37 -0.9 731,975 + Pf6N2E2_640 0.52 -0.6 731,975 + Pf6N2E2_640 0.52 -1.4 731,976 - Pf6N2E2_640 0.52 -0.3 732,228 + -1.0 732,229 - -0.0 732,253 - -0.2 732,325 + Pf6N2E2_641 0.14 -0.1 732,326 - Pf6N2E2_641 0.14 -1.0 732,326 - Pf6N2E2_641 0.14 -0.5 732,401 - Pf6N2E2_641 0.27 +1.9 732,401 - Pf6N2E2_641 0.27 +1.8 732,454 + Pf6N2E2_641 0.36 -0.5 732,454 + Pf6N2E2_641 0.36 +1.4 732,454 + Pf6N2E2_641 0.36 -0.0 732,454 + Pf6N2E2_641 0.36 +0.4 732,454 + Pf6N2E2_641 0.36 +0.2 732,455 - Pf6N2E2_641 0.36 +0.1 732,477 + Pf6N2E2_641 0.40 +0.1 732,622 + Pf6N2E2_641 0.65 -1.3 732,623 - Pf6N2E2_641 0.65 +0.8 732,709 - Pf6N2E2_641 0.80 -0.3 733,517 + Pf6N2E2_642 0.70 -0.1 733,517 + Pf6N2E2_642 0.70 -0.3 733,518 - Pf6N2E2_642 0.70 -0.1 733,518 - Pf6N2E2_642 0.70 -1.1 733,927 + -0.5 733,970 + +0.6 733,997 + +0.2
Or see this region's nucleotide sequence