Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5947 and Pf6N2E2_5948 are separated by 105 nucleotides Pf6N2E2_5948 and Pf6N2E2_5949 are separated by 83 nucleotides Pf6N2E2_5949 and Pf6N2E2_5950 are separated by 18 nucleotides Pf6N2E2_5950 and Pf6N2E2_5951 are separated by 177 nucleotides
Pf6N2E2_5947 - FIG146278: Maf/YceF/YhdE family protein, at 6,768,395 to 6,768,973
_5947
Pf6N2E2_5948 - COG1399 protein, clustered with ribosomal protein L32p, at 6,769,079 to 6,769,606
_5948
Pf6N2E2_5949 - hypothetical protein, at 6,769,690 to 6,769,929
_5949
Pf6N2E2_5950 - Phosphate:acyl-ACP acyltransferase PlsX, at 6,769,948 to 6,770,817
_5950
Pf6N2E2_5951 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 6,770,995 to 6,771,879
_5951
Position (kb)
6769
6770
6771 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6768.959 kb on + strand at 6768.959 kb on + strand at 6768.959 kb on + strand at 6768.959 kb on + strand at 6768.959 kb on + strand at 6768.960 kb on - strand at 6768.962 kb on + strand at 6769.003 kb on + strand at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.431 kb on + strand, within Pf6N2E2_5950 at 6770.811 kb on - strand at 6770.815 kb on + strand at 6770.815 kb on + strand at 6770.816 kb on - strand at 6770.839 kb on + strand at 6770.839 kb on + strand at 6770.839 kb on + strand at 6770.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 6,768,959 + +0.1 6,768,959 + +0.7 6,768,959 + -0.7 6,768,959 + +0.3 6,768,959 + -0.0 6,768,960 - -0.5 6,768,962 + +0.1 6,769,003 + -0.4 6,770,431 + Pf6N2E2_5950 0.56 -1.5 6,770,431 + Pf6N2E2_5950 0.56 -1.5 6,770,431 + Pf6N2E2_5950 0.56 -1.4 6,770,431 + Pf6N2E2_5950 0.56 -2.7 6,770,431 + Pf6N2E2_5950 0.56 -3.1 6,770,431 + Pf6N2E2_5950 0.56 -1.9 6,770,431 + Pf6N2E2_5950 0.56 -3.3 6,770,431 + Pf6N2E2_5950 0.56 -1.9 6,770,811 - -0.9 6,770,815 + +0.3 6,770,815 + +1.5 6,770,816 - -1.6 6,770,839 + +0.6 6,770,839 + -0.3 6,770,839 + -0.9 6,770,839 + -0.2
Or see this region's nucleotide sequence