Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4304 and Pf6N2E2_4305 are separated by 57 nucleotides Pf6N2E2_4305 and Pf6N2E2_4306 are separated by 19 nucleotides Pf6N2E2_4306 and Pf6N2E2_4307 are separated by 5 nucleotides
Pf6N2E2_4304 - Sigma-54 dependent transcriptional regulator, at 5,020,452 to 5,021,969
_4304
Pf6N2E2_4305 - FIG00959590: hypothetical protein, at 5,022,027 to 5,022,167
_4305
Pf6N2E2_4306 - Uncharacterized protein ImpI/VasC, at 5,022,187 to 5,023,032
_4306
Pf6N2E2_4307 - Type VI secretion lipoprotein/VasD, at 5,023,038 to 5,023,541
_4307
Position (kb)
5022
5023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5021.031 kb on + strand, within Pf6N2E2_4304 at 5021.032 kb on - strand, within Pf6N2E2_4304 at 5021.045 kb on + strand, within Pf6N2E2_4304 at 5021.046 kb on - strand, within Pf6N2E2_4304 at 5021.085 kb on - strand, within Pf6N2E2_4304 at 5021.104 kb on - strand, within Pf6N2E2_4304 at 5021.195 kb on + strand, within Pf6N2E2_4304 at 5021.195 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.511 kb on + strand, within Pf6N2E2_4304 at 5021.512 kb on - strand, within Pf6N2E2_4304 at 5021.512 kb on - strand, within Pf6N2E2_4304 at 5021.512 kb on - strand, within Pf6N2E2_4304 at 5021.710 kb on + strand, within Pf6N2E2_4304 at 5021.710 kb on + strand, within Pf6N2E2_4304 at 5021.711 kb on - strand, within Pf6N2E2_4304 at 5021.768 kb on - strand, within Pf6N2E2_4304 at 5021.806 kb on + strand, within Pf6N2E2_4304 at 5021.806 kb on + strand, within Pf6N2E2_4304 at 5021.807 kb on - strand, within Pf6N2E2_4304 at 5021.922 kb on + strand at 5021.922 kb on + strand at 5022.093 kb on - strand, within Pf6N2E2_4305 at 5022.124 kb on - strand, within Pf6N2E2_4305 at 5022.162 kb on - strand at 5022.180 kb on + strand at 5022.180 kb on + strand at 5022.181 kb on - strand at 5022.184 kb on + strand at 5022.184 kb on + strand at 5022.184 kb on + strand at 5022.184 kb on + strand at 5022.184 kb on + strand at 5022.185 kb on - strand at 5022.185 kb on - strand at 5022.185 kb on - strand at 5022.185 kb on - strand at 5022.185 kb on - strand at 5022.233 kb on + strand at 5022.234 kb on - strand at 5022.420 kb on - strand, within Pf6N2E2_4306 at 5022.450 kb on - strand, within Pf6N2E2_4306 at 5022.466 kb on + strand, within Pf6N2E2_4306 at 5022.466 kb on + strand, within Pf6N2E2_4306 at 5022.466 kb on + strand, within Pf6N2E2_4306 at 5022.467 kb on - strand, within Pf6N2E2_4306 at 5022.467 kb on - strand, within Pf6N2E2_4306 at 5022.467 kb on - strand, within Pf6N2E2_4306 at 5022.467 kb on - strand, within Pf6N2E2_4306 at 5022.691 kb on + strand, within Pf6N2E2_4306 at 5022.691 kb on + strand, within Pf6N2E2_4306 at 5022.699 kb on + strand, within Pf6N2E2_4306 at 5022.699 kb on + strand, within Pf6N2E2_4306 at 5022.979 kb on + strand at 5022.980 kb on - strand at 5022.980 kb on - strand at 5022.980 kb on - strand at 5022.980 kb on - strand at 5022.980 kb on - strand at 5022.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,021,031 + Pf6N2E2_4304 0.38 +0.7 5,021,032 - Pf6N2E2_4304 0.38 -1.9 5,021,045 + Pf6N2E2_4304 0.39 -0.1 5,021,046 - Pf6N2E2_4304 0.39 -0.3 5,021,085 - Pf6N2E2_4304 0.42 +0.6 5,021,104 - Pf6N2E2_4304 0.43 -0.3 5,021,195 + Pf6N2E2_4304 0.49 -0.9 5,021,195 + Pf6N2E2_4304 0.49 +2.2 5,021,511 + Pf6N2E2_4304 0.70 -0.1 5,021,511 + Pf6N2E2_4304 0.70 +0.8 5,021,511 + Pf6N2E2_4304 0.70 -0.2 5,021,511 + Pf6N2E2_4304 0.70 -0.1 5,021,511 + Pf6N2E2_4304 0.70 +0.2 5,021,511 + Pf6N2E2_4304 0.70 -0.0 5,021,512 - Pf6N2E2_4304 0.70 +0.1 5,021,512 - Pf6N2E2_4304 0.70 +0.4 5,021,512 - Pf6N2E2_4304 0.70 +0.2 5,021,710 + Pf6N2E2_4304 0.83 +0.7 5,021,710 + Pf6N2E2_4304 0.83 +0.1 5,021,711 - Pf6N2E2_4304 0.83 -0.5 5,021,768 - Pf6N2E2_4304 0.87 -0.1 5,021,806 + Pf6N2E2_4304 0.89 +0.2 5,021,806 + Pf6N2E2_4304 0.89 -0.3 5,021,807 - Pf6N2E2_4304 0.89 -0.1 5,021,922 + -0.5 5,021,922 + -0.1 5,022,093 - Pf6N2E2_4305 0.47 -0.7 5,022,124 - Pf6N2E2_4305 0.69 -0.7 5,022,162 - -0.0 5,022,180 + +0.9 5,022,180 + +0.1 5,022,181 - -0.7 5,022,184 + +1.1 5,022,184 + +0.7 5,022,184 + +0.3 5,022,184 + -0.1 5,022,184 + +0.5 5,022,185 - +0.3 5,022,185 - +0.4 5,022,185 - -0.2 5,022,185 - -0.4 5,022,185 - +0.2 5,022,233 + +0.6 5,022,234 - +0.7 5,022,420 - Pf6N2E2_4306 0.28 -0.1 5,022,450 - Pf6N2E2_4306 0.31 +0.8 5,022,466 + Pf6N2E2_4306 0.33 +0.3 5,022,466 + Pf6N2E2_4306 0.33 -0.3 5,022,466 + Pf6N2E2_4306 0.33 +0.3 5,022,467 - Pf6N2E2_4306 0.33 +0.3 5,022,467 - Pf6N2E2_4306 0.33 +0.2 5,022,467 - Pf6N2E2_4306 0.33 +1.4 5,022,467 - Pf6N2E2_4306 0.33 -1.0 5,022,691 + Pf6N2E2_4306 0.60 +1.0 5,022,691 + Pf6N2E2_4306 0.60 +0.5 5,022,699 + Pf6N2E2_4306 0.61 -0.9 5,022,699 + Pf6N2E2_4306 0.61 +0.3 5,022,979 + -0.0 5,022,980 - +0.1 5,022,980 - +0.7 5,022,980 - +1.2 5,022,980 - -0.1 5,022,980 - +0.4 5,022,980 - +0.4
Or see this region's nucleotide sequence