Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4305

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4304 and Pf6N2E2_4305 are separated by 57 nucleotidesPf6N2E2_4305 and Pf6N2E2_4306 are separated by 19 nucleotidesPf6N2E2_4306 and Pf6N2E2_4307 are separated by 5 nucleotides Pf6N2E2_4304 - Sigma-54 dependent transcriptional regulator, at 5,020,452 to 5,021,969 _4304 Pf6N2E2_4305 - FIG00959590: hypothetical protein, at 5,022,027 to 5,022,167 _4305 Pf6N2E2_4306 - Uncharacterized protein ImpI/VasC, at 5,022,187 to 5,023,032 _4306 Pf6N2E2_4307 - Type VI secretion lipoprotein/VasD, at 5,023,038 to 5,023,541 _4307 Position (kb) 5022 5023Strain fitness (log2 ratio) -2 -1 0 1 2at 5021.031 kb on + strand, within Pf6N2E2_4304at 5021.032 kb on - strand, within Pf6N2E2_4304at 5021.045 kb on + strand, within Pf6N2E2_4304at 5021.046 kb on - strand, within Pf6N2E2_4304at 5021.085 kb on - strand, within Pf6N2E2_4304at 5021.104 kb on - strand, within Pf6N2E2_4304at 5021.195 kb on + strand, within Pf6N2E2_4304at 5021.195 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.710 kb on + strand, within Pf6N2E2_4304at 5021.710 kb on + strand, within Pf6N2E2_4304at 5021.711 kb on - strand, within Pf6N2E2_4304at 5021.768 kb on - strand, within Pf6N2E2_4304at 5021.806 kb on + strand, within Pf6N2E2_4304at 5021.806 kb on + strand, within Pf6N2E2_4304at 5021.807 kb on - strand, within Pf6N2E2_4304at 5021.922 kb on + strandat 5021.922 kb on + strandat 5022.093 kb on - strand, within Pf6N2E2_4305at 5022.124 kb on - strand, within Pf6N2E2_4305at 5022.162 kb on - strandat 5022.180 kb on + strandat 5022.180 kb on + strandat 5022.181 kb on - strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.233 kb on + strandat 5022.234 kb on - strandat 5022.420 kb on - strand, within Pf6N2E2_4306at 5022.450 kb on - strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.979 kb on + strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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5,021,031 + Pf6N2E2_4304 0.38 +0.7
5,021,032 - Pf6N2E2_4304 0.38 -1.9
5,021,045 + Pf6N2E2_4304 0.39 -0.1
5,021,046 - Pf6N2E2_4304 0.39 -0.3
5,021,085 - Pf6N2E2_4304 0.42 +0.6
5,021,104 - Pf6N2E2_4304 0.43 -0.3
5,021,195 + Pf6N2E2_4304 0.49 -0.9
5,021,195 + Pf6N2E2_4304 0.49 +2.2
5,021,511 + Pf6N2E2_4304 0.70 -0.1
5,021,511 + Pf6N2E2_4304 0.70 +0.8
5,021,511 + Pf6N2E2_4304 0.70 -0.2
5,021,511 + Pf6N2E2_4304 0.70 -0.1
5,021,511 + Pf6N2E2_4304 0.70 +0.2
5,021,511 + Pf6N2E2_4304 0.70 -0.0
5,021,512 - Pf6N2E2_4304 0.70 +0.1
5,021,512 - Pf6N2E2_4304 0.70 +0.4
5,021,512 - Pf6N2E2_4304 0.70 +0.2
5,021,710 + Pf6N2E2_4304 0.83 +0.7
5,021,710 + Pf6N2E2_4304 0.83 +0.1
5,021,711 - Pf6N2E2_4304 0.83 -0.5
5,021,768 - Pf6N2E2_4304 0.87 -0.1
5,021,806 + Pf6N2E2_4304 0.89 +0.2
5,021,806 + Pf6N2E2_4304 0.89 -0.3
5,021,807 - Pf6N2E2_4304 0.89 -0.1
5,021,922 + -0.5
5,021,922 + -0.1
5,022,093 - Pf6N2E2_4305 0.47 -0.7
5,022,124 - Pf6N2E2_4305 0.69 -0.7
5,022,162 - -0.0
5,022,180 + +0.9
5,022,180 + +0.1
5,022,181 - -0.7
5,022,184 + +1.1
5,022,184 + +0.7
5,022,184 + +0.3
5,022,184 + -0.1
5,022,184 + +0.5
5,022,185 - +0.3
5,022,185 - +0.4
5,022,185 - -0.2
5,022,185 - -0.4
5,022,185 - +0.2
5,022,233 + +0.6
5,022,234 - +0.7
5,022,420 - Pf6N2E2_4306 0.28 -0.1
5,022,450 - Pf6N2E2_4306 0.31 +0.8
5,022,466 + Pf6N2E2_4306 0.33 +0.3
5,022,466 + Pf6N2E2_4306 0.33 -0.3
5,022,466 + Pf6N2E2_4306 0.33 +0.3
5,022,467 - Pf6N2E2_4306 0.33 +0.3
5,022,467 - Pf6N2E2_4306 0.33 +0.2
5,022,467 - Pf6N2E2_4306 0.33 +1.4
5,022,467 - Pf6N2E2_4306 0.33 -1.0
5,022,691 + Pf6N2E2_4306 0.60 +1.0
5,022,691 + Pf6N2E2_4306 0.60 +0.5
5,022,699 + Pf6N2E2_4306 0.61 -0.9
5,022,699 + Pf6N2E2_4306 0.61 +0.3
5,022,979 + -0.0
5,022,980 - +0.1
5,022,980 - +0.7
5,022,980 - +1.2
5,022,980 - -0.1
5,022,980 - +0.4
5,022,980 - +0.4

Or see this region's nucleotide sequence