Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3635

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3633 and Pf6N2E2_3634 are separated by 10 nucleotidesPf6N2E2_3634 and Pf6N2E2_3635 overlap by 4 nucleotidesPf6N2E2_3635 and Pf6N2E2_3636 overlap by 1 nucleotides Pf6N2E2_3633 - Topoisomerase IV subunit A (EC 5.99.1.-), at 4,231,184 to 4,233,448 _3633 Pf6N2E2_3634 - Transporter, at 4,233,459 to 4,233,977 _3634 Pf6N2E2_3635 - FIG00953138: hypothetical protein, at 4,233,974 to 4,234,960 _3635 Pf6N2E2_3636 - Topoisomerase IV subunit B (EC 5.99.1.-), at 4,234,960 to 4,236,864 _3636 Position (kb) 4233 4234 4235Strain fitness (log2 ratio) -1 0 1at 4233.657 kb on - strand, within Pf6N2E2_3634at 4233.858 kb on - strand, within Pf6N2E2_3634at 4234.238 kb on - strand, within Pf6N2E2_3635at 4234.596 kb on + strand, within Pf6N2E2_3635at 4234.596 kb on + strand, within Pf6N2E2_3635at 4234.597 kb on - strand, within Pf6N2E2_3635

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,233,657 - Pf6N2E2_3634 0.38 +0.5
4,233,858 - Pf6N2E2_3634 0.77 +0.4
4,234,238 - Pf6N2E2_3635 0.27 -0.4
4,234,596 + Pf6N2E2_3635 0.63 -1.7
4,234,596 + Pf6N2E2_3635 0.63 +1.4
4,234,597 - Pf6N2E2_3635 0.63 -0.2

Or see this region's nucleotide sequence