Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3534 and Pf6N2E2_3535 are separated by 390 nucleotides Pf6N2E2_3535 and Pf6N2E2_3536 overlap by 8 nucleotides
Pf6N2E2_3534 - Cobalamin biosynthesis protein CobG, at 4,124,063 to 4,125,331
_3534
Pf6N2E2_3535 - Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-), at 4,125,722 to 4,126,933
_3535
Pf6N2E2_3536 - Cobalt-precorrin-6 synthase, anaerobic, at 4,126,926 to 4,128,023
_3536
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -2
-1
0
1 at 4125.035 kb on - strand, within Pf6N2E2_3534 at 4125.353 kb on + strand at 4125.353 kb on + strand at 4125.354 kb on - strand at 4125.354 kb on - strand at 4125.395 kb on - strand at 4125.430 kb on + strand at 4125.430 kb on + strand at 4125.431 kb on - strand at 4125.506 kb on + strand at 4125.506 kb on + strand at 4125.506 kb on + strand at 4125.506 kb on + strand at 4125.506 kb on + strand at 4125.506 kb on + strand at 4125.507 kb on - strand at 4125.507 kb on - strand at 4125.638 kb on + strand at 4125.639 kb on - strand at 4125.639 kb on - strand at 4125.639 kb on - strand at 4125.682 kb on - strand at 4125.741 kb on + strand at 4125.962 kb on + strand, within Pf6N2E2_3535 at 4125.962 kb on + strand, within Pf6N2E2_3535 at 4125.962 kb on + strand, within Pf6N2E2_3535 at 4125.963 kb on - strand, within Pf6N2E2_3535 at 4125.963 kb on - strand, within Pf6N2E2_3535 at 4125.963 kb on - strand, within Pf6N2E2_3535 at 4125.963 kb on - strand, within Pf6N2E2_3535 at 4125.963 kb on - strand, within Pf6N2E2_3535 at 4126.128 kb on + strand, within Pf6N2E2_3535 at 4126.128 kb on + strand, within Pf6N2E2_3535 at 4126.128 kb on + strand, within Pf6N2E2_3535 at 4126.356 kb on + strand, within Pf6N2E2_3535 at 4126.534 kb on + strand, within Pf6N2E2_3535 at 4126.534 kb on + strand, within Pf6N2E2_3535 at 4126.534 kb on + strand, within Pf6N2E2_3535 at 4126.535 kb on - strand, within Pf6N2E2_3535 at 4126.535 kb on - strand, within Pf6N2E2_3535 at 4126.700 kb on - strand, within Pf6N2E2_3535 at 4127.060 kb on - strand, within Pf6N2E2_3536 at 4127.060 kb on - strand, within Pf6N2E2_3536 at 4127.218 kb on + strand, within Pf6N2E2_3536 at 4127.218 kb on + strand, within Pf6N2E2_3536 at 4127.218 kb on + strand, within Pf6N2E2_3536 at 4127.219 kb on - strand, within Pf6N2E2_3536 at 4127.356 kb on - strand, within Pf6N2E2_3536 at 4127.499 kb on + strand, within Pf6N2E2_3536 at 4127.499 kb on + strand, within Pf6N2E2_3536 at 4127.499 kb on + strand, within Pf6N2E2_3536 at 4127.500 kb on - strand, within Pf6N2E2_3536 at 4127.500 kb on - strand, within Pf6N2E2_3536 at 4127.500 kb on - strand, within Pf6N2E2_3536 at 4127.500 kb on - strand, within Pf6N2E2_3536 at 4127.604 kb on + strand, within Pf6N2E2_3536 at 4127.605 kb on - strand, within Pf6N2E2_3536 at 4127.605 kb on - strand, within Pf6N2E2_3536
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 4,125,035 - Pf6N2E2_3534 0.77 -0.1 4,125,353 + -0.0 4,125,353 + +0.8 4,125,354 - -0.8 4,125,354 - -0.6 4,125,395 - +0.8 4,125,430 + -2.3 4,125,430 + -2.6 4,125,431 - +0.2 4,125,506 + -0.6 4,125,506 + -0.1 4,125,506 + +0.0 4,125,506 + +0.5 4,125,506 + +1.3 4,125,506 + +0.8 4,125,507 - +0.2 4,125,507 - +0.4 4,125,638 + -0.1 4,125,639 - +0.8 4,125,639 - +0.6 4,125,639 - -0.1 4,125,682 - +0.8 4,125,741 + -0.6 4,125,962 + Pf6N2E2_3535 0.20 -1.3 4,125,962 + Pf6N2E2_3535 0.20 -0.1 4,125,962 + Pf6N2E2_3535 0.20 +1.3 4,125,963 - Pf6N2E2_3535 0.20 +0.5 4,125,963 - Pf6N2E2_3535 0.20 -0.2 4,125,963 - Pf6N2E2_3535 0.20 -1.6 4,125,963 - Pf6N2E2_3535 0.20 -0.2 4,125,963 - Pf6N2E2_3535 0.20 -0.3 4,126,128 + Pf6N2E2_3535 0.33 +0.1 4,126,128 + Pf6N2E2_3535 0.33 -1.0 4,126,128 + Pf6N2E2_3535 0.33 -0.4 4,126,356 + Pf6N2E2_3535 0.52 +0.0 4,126,534 + Pf6N2E2_3535 0.67 -0.1 4,126,534 + Pf6N2E2_3535 0.67 -2.1 4,126,534 + Pf6N2E2_3535 0.67 -1.6 4,126,535 - Pf6N2E2_3535 0.67 +0.1 4,126,535 - Pf6N2E2_3535 0.67 -0.3 4,126,700 - Pf6N2E2_3535 0.81 -2.0 4,127,060 - Pf6N2E2_3536 0.12 -0.4 4,127,060 - Pf6N2E2_3536 0.12 -0.7 4,127,218 + Pf6N2E2_3536 0.27 +0.1 4,127,218 + Pf6N2E2_3536 0.27 +0.2 4,127,218 + Pf6N2E2_3536 0.27 +0.3 4,127,219 - Pf6N2E2_3536 0.27 -0.3 4,127,356 - Pf6N2E2_3536 0.39 -0.2 4,127,499 + Pf6N2E2_3536 0.52 -0.5 4,127,499 + Pf6N2E2_3536 0.52 -0.6 4,127,499 + Pf6N2E2_3536 0.52 +0.3 4,127,500 - Pf6N2E2_3536 0.52 +0.0 4,127,500 - Pf6N2E2_3536 0.52 +0.4 4,127,500 - Pf6N2E2_3536 0.52 -1.9 4,127,500 - Pf6N2E2_3536 0.52 -0.9 4,127,604 + Pf6N2E2_3536 0.62 -0.1 4,127,605 - Pf6N2E2_3536 0.62 -1.5 4,127,605 - Pf6N2E2_3536 0.62 -0.8
Or see this region's nucleotide sequence