Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_288 and Pf6N2E2_289 are separated by 482 nucleotides
Pf6N2E2_288 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 355,657 to 357,882
_288
Pf6N2E2_289 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 358,365 to 359,621
_289
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -2
-1
0
1 at 354.692 kb on - strand at 354.712 kb on - strand at 354.715 kb on - strand at 354.715 kb on - strand at 354.784 kb on - strand at 354.814 kb on + strand at 354.903 kb on - strand at 354.907 kb on - strand at 354.941 kb on + strand at 354.941 kb on + strand at 354.989 kb on + strand at 354.995 kb on + strand at 354.995 kb on + strand at 355.179 kb on + strand at 355.208 kb on + strand at 355.243 kb on + strand at 355.297 kb on - strand at 355.300 kb on + strand at 355.300 kb on + strand at 355.434 kb on + strand at 355.435 kb on - strand at 355.497 kb on + strand at 355.497 kb on + strand at 355.501 kb on + strand at 355.501 kb on + strand at 355.501 kb on + strand at 355.501 kb on + strand at 355.515 kb on + strand at 355.515 kb on + strand at 355.516 kb on - strand at 355.521 kb on + strand at 355.536 kb on + strand at 355.536 kb on + strand at 355.536 kb on + strand at 355.547 kb on + strand at 355.547 kb on + strand at 355.547 kb on + strand at 355.548 kb on - strand at 355.579 kb on + strand at 355.579 kb on + strand at 355.579 kb on + strand at 355.579 kb on + strand at 355.579 kb on + strand at 355.598 kb on + strand at 355.650 kb on + strand at 355.650 kb on + strand at 355.650 kb on + strand at 355.651 kb on - strand at 355.651 kb on - strand at 355.651 kb on - strand at 355.658 kb on + strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.659 kb on - strand at 355.737 kb on - strand at 355.737 kb on - strand at 356.249 kb on - strand, within Pf6N2E2_288 at 356.369 kb on + strand, within Pf6N2E2_288 at 356.370 kb on - strand, within Pf6N2E2_288 at 356.624 kb on + strand, within Pf6N2E2_288 at 357.059 kb on + strand, within Pf6N2E2_288 at 357.235 kb on + strand, within Pf6N2E2_288 at 357.908 kb on - strand at 357.908 kb on - strand at 358.052 kb on + strand at 358.077 kb on - strand at 358.077 kb on - strand at 358.119 kb on - strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.120 kb on + strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.121 kb on - strand at 358.124 kb on + strand at 358.124 kb on + strand at 358.124 kb on + strand at 358.124 kb on + strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.125 kb on - strand at 358.128 kb on + strand at 358.128 kb on + strand at 358.128 kb on + strand at 358.128 kb on + strand at 358.128 kb on + strand at 358.129 kb on - strand at 358.129 kb on - strand at 358.129 kb on - strand at 358.129 kb on - strand at 358.129 kb on - strand at 358.129 kb on - strand at 358.153 kb on + strand at 358.207 kb on + strand at 358.207 kb on + strand at 358.248 kb on + strand at 358.249 kb on - strand at 358.291 kb on - strand at 358.291 kb on - strand at 358.433 kb on + strand at 358.433 kb on + strand at 358.434 kb on - strand at 358.434 kb on - strand at 358.434 kb on - strand at 358.434 kb on - strand at 358.434 kb on - strand at 358.540 kb on - strand, within Pf6N2E2_289 at 358.540 kb on - strand, within Pf6N2E2_289 at 358.575 kb on + strand, within Pf6N2E2_289 at 358.576 kb on - strand, within Pf6N2E2_289 at 358.602 kb on + strand, within Pf6N2E2_289 at 358.602 kb on + strand, within Pf6N2E2_289 at 358.653 kb on + strand, within Pf6N2E2_289 at 358.653 kb on + strand, within Pf6N2E2_289 at 358.743 kb on + strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.744 kb on - strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.848 kb on + strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289 at 358.849 kb on - strand, within Pf6N2E2_289
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 354,692 - +0.9 354,712 - +0.7 354,715 - +0.1 354,715 - -0.3 354,784 - -0.9 354,814 + +0.2 354,903 - -0.7 354,907 - +0.1 354,941 + -0.4 354,941 + -0.4 354,989 + +0.6 354,995 + -0.1 354,995 + -0.0 355,179 + +0.7 355,208 + +0.3 355,243 + -1.5 355,297 - -0.7 355,300 + +0.6 355,300 + +1.1 355,434 + +0.0 355,435 - +1.0 355,497 + -0.1 355,497 + +0.3 355,501 + +1.1 355,501 + +0.7 355,501 + +0.3 355,501 + +0.5 355,515 + +0.1 355,515 + +0.2 355,516 - -0.0 355,521 + +0.2 355,536 + +0.7 355,536 + +0.6 355,536 + -0.8 355,547 + -0.2 355,547 + -0.0 355,547 + -0.4 355,548 - -2.0 355,579 + -0.1 355,579 + -0.5 355,579 + +0.4 355,579 + -0.6 355,579 + +0.4 355,598 + +0.1 355,650 + +0.3 355,650 + -0.3 355,650 + -0.7 355,651 - -0.5 355,651 - -0.6 355,651 - +0.3 355,658 + +0.7 355,659 - -0.0 355,659 - +0.9 355,659 - -2.0 355,659 - -0.1 355,659 - +0.8 355,659 - +0.4 355,659 - +0.4 355,659 - +0.1 355,737 - -1.1 355,737 - +0.2 356,249 - Pf6N2E2_288 0.27 +0.3 356,369 + Pf6N2E2_288 0.32 -0.8 356,370 - Pf6N2E2_288 0.32 -0.8 356,624 + Pf6N2E2_288 0.43 -2.5 357,059 + Pf6N2E2_288 0.63 -1.1 357,235 + Pf6N2E2_288 0.71 -0.9 357,908 - -0.1 357,908 - +1.2 358,052 + -1.2 358,077 - +1.1 358,077 - +0.6 358,119 - -0.1 358,120 + -0.9 358,120 + -0.8 358,120 + -0.1 358,120 + -0.1 358,120 + +0.9 358,120 + -0.9 358,120 + +1.4 358,120 + -1.7 358,121 - +0.8 358,121 - +0.9 358,121 - -0.7 358,121 - +0.4 358,121 - +0.6 358,121 - +0.5 358,121 - -0.4 358,121 - +0.2 358,121 - +0.5 358,121 - -1.4 358,121 - -0.1 358,121 - +0.7 358,124 + -2.1 358,124 + +1.0 358,124 + +0.8 358,124 + -0.9 358,125 - -1.1 358,125 - -0.1 358,125 - -0.4 358,125 - +0.2 358,125 - -0.9 358,125 - +0.2 358,125 - +0.1 358,125 - +0.4 358,125 - +0.1 358,128 + +0.2 358,128 + +1.4 358,128 + +0.3 358,128 + +0.2 358,128 + +1.0 358,129 - +1.2 358,129 - +1.2 358,129 - +0.0 358,129 - -0.5 358,129 - +0.5 358,129 - +0.2 358,153 + +0.5 358,207 + -0.7 358,207 + -0.3 358,248 + +0.9 358,249 - +0.4 358,291 - +1.0 358,291 - -0.6 358,433 + +1.1 358,433 + -0.4 358,434 - -0.3 358,434 - -0.6 358,434 - +0.5 358,434 - -0.6 358,434 - -0.1 358,540 - Pf6N2E2_289 0.14 -0.6 358,540 - Pf6N2E2_289 0.14 -0.4 358,575 + Pf6N2E2_289 0.17 +0.0 358,576 - Pf6N2E2_289 0.17 +0.1 358,602 + Pf6N2E2_289 0.19 -0.1 358,602 + Pf6N2E2_289 0.19 +0.2 358,653 + Pf6N2E2_289 0.23 +0.6 358,653 + Pf6N2E2_289 0.23 -0.1 358,743 + Pf6N2E2_289 0.30 +0.4 358,744 - Pf6N2E2_289 0.30 +0.9 358,744 - Pf6N2E2_289 0.30 +0.6 358,744 - Pf6N2E2_289 0.30 +0.3 358,744 - Pf6N2E2_289 0.30 +0.3 358,848 + Pf6N2E2_289 0.38 -0.0 358,848 + Pf6N2E2_289 0.38 +0.2 358,848 + Pf6N2E2_289 0.38 +0.6 358,848 + Pf6N2E2_289 0.38 -0.5 358,848 + Pf6N2E2_289 0.38 -0.4 358,848 + Pf6N2E2_289 0.38 +1.3 358,848 + Pf6N2E2_289 0.38 +0.1 358,848 + Pf6N2E2_289 0.38 -0.4 358,848 + Pf6N2E2_289 0.38 -0.4 358,848 + Pf6N2E2_289 0.38 +0.6 358,848 + Pf6N2E2_289 0.38 -0.5 358,848 + Pf6N2E2_289 0.38 +0.0 358,849 - Pf6N2E2_289 0.39 -0.4 358,849 - Pf6N2E2_289 0.39 +0.1 358,849 - Pf6N2E2_289 0.39 -0.1 358,849 - Pf6N2E2_289 0.39 +0.2 358,849 - Pf6N2E2_289 0.39 +0.1 358,849 - Pf6N2E2_289 0.39 -1.1 358,849 - Pf6N2E2_289 0.39 +1.2
Or see this region's nucleotide sequence