Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1969

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1967 and Pf6N2E2_1968 overlap by 14 nucleotidesPf6N2E2_1968 and Pf6N2E2_1969 overlap by 48 nucleotides Pf6N2E2_1967 - Cobalt-zinc-cadmium resistance protein, at 2,333,286 to 2,333,915 _1967 Pf6N2E2_1968 - Cobalt-zinc-cadmium resistance protein, at 2,333,902 to 2,334,018 _1968 Pf6N2E2_1969 - Major facilitator superfamily MFS_1, at 2,333,971 to 2,334,858 _1969 Position (kb) 2333 2334 2335Strain fitness (log2 ratio) -2 -1 0 1at 2333.124 kb on - strandat 2333.124 kb on - strandat 2333.159 kb on - strandat 2333.193 kb on - strandat 2333.213 kb on - strandat 2333.213 kb on - strandat 2333.244 kb on + strandat 2333.245 kb on - strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.471 kb on - strand, within Pf6N2E2_1967at 2333.471 kb on - strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.480 kb on - strand, within Pf6N2E2_1967at 2333.499 kb on + strand, within Pf6N2E2_1967at 2333.500 kb on - strand, within Pf6N2E2_1967at 2333.562 kb on + strand, within Pf6N2E2_1967at 2333.563 kb on - strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.801 kb on - strand, within Pf6N2E2_1967at 2333.809 kb on + strand, within Pf6N2E2_1967at 2333.842 kb on + strand, within Pf6N2E2_1967at 2333.842 kb on + strand, within Pf6N2E2_1967at 2333.843 kb on - strand, within Pf6N2E2_1967at 2333.904 kb on - strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.915 kb on + strandat 2333.916 kb on - strand, within Pf6N2E2_1968at 2333.916 kb on - strand, within Pf6N2E2_1968at 2333.916 kb on - strand, within Pf6N2E2_1968at 2333.916 kb on - strand, within Pf6N2E2_1968at 2333.916 kb on - strand, within Pf6N2E2_1968at 2334.041 kb on - strandat 2334.041 kb on - strandat 2334.041 kb on - strandat 2334.154 kb on + strand, within Pf6N2E2_1969at 2334.495 kb on - strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.515 kb on + strand, within Pf6N2E2_1969at 2334.516 kb on - strand, within Pf6N2E2_1969at 2334.516 kb on - strand, within Pf6N2E2_1969at 2334.516 kb on - strand, within Pf6N2E2_1969at 2334.516 kb on - strand, within Pf6N2E2_1969at 2334.516 kb on - strand, within Pf6N2E2_1969at 2334.603 kb on - strand, within Pf6N2E2_1969at 2334.649 kb on + strand, within Pf6N2E2_1969at 2334.679 kb on + strand, within Pf6N2E2_1969at 2334.679 kb on + strand, within Pf6N2E2_1969at 2334.680 kb on - strand, within Pf6N2E2_1969at 2334.680 kb on - strand, within Pf6N2E2_1969at 2334.680 kb on - strand, within Pf6N2E2_1969at 2334.680 kb on - strand, within Pf6N2E2_1969at 2334.689 kb on + strand, within Pf6N2E2_1969at 2334.689 kb on + strand, within Pf6N2E2_1969at 2334.689 kb on + strand, within Pf6N2E2_1969at 2334.689 kb on + strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.690 kb on - strand, within Pf6N2E2_1969at 2334.691 kb on + strand, within Pf6N2E2_1969at 2334.692 kb on - strand, within Pf6N2E2_1969at 2334.734 kb on + strand, within Pf6N2E2_1969at 2334.734 kb on + strand, within Pf6N2E2_1969at 2334.735 kb on - strand, within Pf6N2E2_1969at 2334.760 kb on - strand, within Pf6N2E2_1969at 2334.760 kb on - strand, within Pf6N2E2_1969at 2334.760 kb on - strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.763 kb on + strand, within Pf6N2E2_1969at 2334.764 kb on - strand, within Pf6N2E2_1969at 2334.764 kb on - strand, within Pf6N2E2_1969at 2334.764 kb on - strand, within Pf6N2E2_1969at 2334.764 kb on - strand, within Pf6N2E2_1969at 2334.786 kb on - strandat 2334.995 kb on - strandat 2335.128 kb on + strandat 2335.129 kb on - strandat 2335.149 kb on - strandat 2335.188 kb on - strandat 2335.188 kb on - strandat 2335.190 kb on + strandat 2335.191 kb on - strandat 2335.235 kb on + strandat 2335.236 kb on - strandat 2335.313 kb on - strandat 2335.461 kb on - strandat 2335.537 kb on + strandat 2335.537 kb on + strandat 2335.538 kb on - strandat 2335.538 kb on - strandat 2335.540 kb on + strandat 2335.541 kb on - strandat 2335.541 kb on - strandat 2335.555 kb on + strandat 2335.555 kb on + strandat 2335.556 kb on - strandat 2335.600 kb on - strandat 2335.600 kb on - strandat 2335.600 kb on - strandat 2335.619 kb on - strandat 2335.619 kb on - strandat 2335.690 kb on + strandat 2335.690 kb on + strandat 2335.690 kb on + strandat 2335.690 kb on + strandat 2335.690 kb on + strandat 2335.691 kb on - strandat 2335.691 kb on - strandat 2335.693 kb on + strandat 2335.694 kb on - strandat 2335.694 kb on - strandat 2335.696 kb on + strandat 2335.697 kb on - strandat 2335.705 kb on + strandat 2335.705 kb on + strandat 2335.705 kb on + strandat 2335.705 kb on + strandat 2335.705 kb on + strandat 2335.706 kb on - strandat 2335.706 kb on - strandat 2335.769 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
2,333,124 - -0.6
2,333,124 - +0.1
2,333,159 - -0.3
2,333,193 - -1.8
2,333,213 - +0.4
2,333,213 - +0.5
2,333,244 + +0.1
2,333,245 - +0.5
2,333,254 + -0.2
2,333,254 + +0.5
2,333,254 + +0.2
2,333,254 + +0.3
2,333,255 - -0.1
2,333,255 - +0.1
2,333,255 - +0.0
2,333,255 - +0.5
2,333,470 + Pf6N2E2_1967 0.29 -0.2
2,333,470 + Pf6N2E2_1967 0.29 +0.2
2,333,470 + Pf6N2E2_1967 0.29 +0.5
2,333,471 - Pf6N2E2_1967 0.29 +0.3
2,333,471 - Pf6N2E2_1967 0.29 +0.3
2,333,479 + Pf6N2E2_1967 0.31 +0.4
2,333,479 + Pf6N2E2_1967 0.31 -0.1
2,333,479 + Pf6N2E2_1967 0.31 -0.9
2,333,479 + Pf6N2E2_1967 0.31 +1.0
2,333,479 + Pf6N2E2_1967 0.31 -0.2
2,333,480 - Pf6N2E2_1967 0.31 +1.0
2,333,499 + Pf6N2E2_1967 0.34 +0.6
2,333,500 - Pf6N2E2_1967 0.34 +1.4
2,333,562 + Pf6N2E2_1967 0.44 +0.5
2,333,563 - Pf6N2E2_1967 0.44 -0.8
2,333,647 + Pf6N2E2_1967 0.57 +0.9
2,333,647 + Pf6N2E2_1967 0.57 +0.0
2,333,647 + Pf6N2E2_1967 0.57 +0.2
2,333,647 + Pf6N2E2_1967 0.57 -0.0
2,333,647 + Pf6N2E2_1967 0.57 -0.2
2,333,647 + Pf6N2E2_1967 0.57 +0.1
2,333,648 - Pf6N2E2_1967 0.57 -1.2
2,333,648 - Pf6N2E2_1967 0.57 +0.7
2,333,648 - Pf6N2E2_1967 0.57 +1.4
2,333,648 - Pf6N2E2_1967 0.57 -0.3
2,333,648 - Pf6N2E2_1967 0.57 -1.0
2,333,648 - Pf6N2E2_1967 0.57 -0.3
2,333,801 - Pf6N2E2_1967 0.82 +0.3
2,333,809 + Pf6N2E2_1967 0.83 +0.8
2,333,842 + Pf6N2E2_1967 0.88 -0.3
2,333,842 + Pf6N2E2_1967 0.88 +0.4
2,333,843 - Pf6N2E2_1967 0.88 -0.6
2,333,904 - -1.3
2,333,915 + -0.2
2,333,915 + +0.7
2,333,915 + -0.5
2,333,915 + -0.4
2,333,915 + -0.2
2,333,915 + -0.1
2,333,915 + +0.0
2,333,916 - Pf6N2E2_1968 0.12 +0.5
2,333,916 - Pf6N2E2_1968 0.12 +0.7
2,333,916 - Pf6N2E2_1968 0.12 -0.2
2,333,916 - Pf6N2E2_1968 0.12 -0.4
2,333,916 - Pf6N2E2_1968 0.12 +0.8
2,334,041 - +0.5
2,334,041 - -0.3
2,334,041 - -0.7
2,334,154 + Pf6N2E2_1969 0.21 +0.4
2,334,495 - Pf6N2E2_1969 0.59 -0.3
2,334,515 + Pf6N2E2_1969 0.61 +0.5
2,334,515 + Pf6N2E2_1969 0.61 +0.7
2,334,515 + Pf6N2E2_1969 0.61 -1.4
2,334,515 + Pf6N2E2_1969 0.61 +0.4
2,334,515 + Pf6N2E2_1969 0.61 -0.3
2,334,515 + Pf6N2E2_1969 0.61 +0.4
2,334,516 - Pf6N2E2_1969 0.61 +0.2
2,334,516 - Pf6N2E2_1969 0.61 +0.5
2,334,516 - Pf6N2E2_1969 0.61 +0.2
2,334,516 - Pf6N2E2_1969 0.61 +0.4
2,334,516 - Pf6N2E2_1969 0.61 +0.7
2,334,603 - Pf6N2E2_1969 0.71 +0.4
2,334,649 + Pf6N2E2_1969 0.76 -0.3
2,334,679 + Pf6N2E2_1969 0.80 +0.6
2,334,679 + Pf6N2E2_1969 0.80 +0.8
2,334,680 - Pf6N2E2_1969 0.80 +0.8
2,334,680 - Pf6N2E2_1969 0.80 +0.2
2,334,680 - Pf6N2E2_1969 0.80 +0.8
2,334,680 - Pf6N2E2_1969 0.80 +0.1
2,334,689 + Pf6N2E2_1969 0.81 +0.8
2,334,689 + Pf6N2E2_1969 0.81 +0.3
2,334,689 + Pf6N2E2_1969 0.81 +0.2
2,334,689 + Pf6N2E2_1969 0.81 +1.0
2,334,690 - Pf6N2E2_1969 0.81 -0.3
2,334,690 - Pf6N2E2_1969 0.81 -0.2
2,334,690 - Pf6N2E2_1969 0.81 -0.5
2,334,690 - Pf6N2E2_1969 0.81 +0.7
2,334,690 - Pf6N2E2_1969 0.81 +0.5
2,334,690 - Pf6N2E2_1969 0.81 -0.8
2,334,690 - Pf6N2E2_1969 0.81 -0.5
2,334,691 + Pf6N2E2_1969 0.81 +0.6
2,334,692 - Pf6N2E2_1969 0.81 +0.2
2,334,734 + Pf6N2E2_1969 0.86 +0.2
2,334,734 + Pf6N2E2_1969 0.86 -0.0
2,334,735 - Pf6N2E2_1969 0.86 +1.1
2,334,760 - Pf6N2E2_1969 0.89 -0.8
2,334,760 - Pf6N2E2_1969 0.89 +0.4
2,334,760 - Pf6N2E2_1969 0.89 +1.1
2,334,763 + Pf6N2E2_1969 0.89 +0.5
2,334,763 + Pf6N2E2_1969 0.89 +1.2
2,334,763 + Pf6N2E2_1969 0.89 +0.5
2,334,763 + Pf6N2E2_1969 0.89 +1.1
2,334,763 + Pf6N2E2_1969 0.89 -0.1
2,334,763 + Pf6N2E2_1969 0.89 +1.4
2,334,763 + Pf6N2E2_1969 0.89 +1.5
2,334,763 + Pf6N2E2_1969 0.89 -0.8
2,334,764 - Pf6N2E2_1969 0.89 +1.7
2,334,764 - Pf6N2E2_1969 0.89 -0.0
2,334,764 - Pf6N2E2_1969 0.89 +0.9
2,334,764 - Pf6N2E2_1969 0.89 +0.1
2,334,786 - -0.4
2,334,995 - -0.0
2,335,128 + +0.5
2,335,129 - +0.1
2,335,149 - +0.4
2,335,188 - +0.1
2,335,188 - +0.1
2,335,190 + +1.1
2,335,191 - +0.7
2,335,235 + -0.8
2,335,236 - +0.2
2,335,313 - +0.3
2,335,461 - +0.5
2,335,537 + -0.2
2,335,537 + +0.9
2,335,538 - -0.0
2,335,538 - -0.0
2,335,540 + -0.2
2,335,541 - +0.1
2,335,541 - +0.1
2,335,555 + -0.5
2,335,555 + +0.3
2,335,556 - +0.3
2,335,600 - -0.4
2,335,600 - +1.6
2,335,600 - -0.1
2,335,619 - +0.8
2,335,619 - +1.4
2,335,690 + -2.3
2,335,690 + +1.1
2,335,690 + +0.2
2,335,690 + +0.5
2,335,690 + +0.8
2,335,691 - +1.0
2,335,691 - +0.8
2,335,693 + +1.3
2,335,694 - +0.5
2,335,694 - -0.1
2,335,696 + +0.5
2,335,697 - +0.5
2,335,705 + +0.0
2,335,705 + -0.5
2,335,705 + +0.8
2,335,705 + +0.1
2,335,705 + +0.0
2,335,706 - +0.8
2,335,706 - -0.8
2,335,769 + -0.2

Or see this region's nucleotide sequence