Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04810 and MMP_RS04815 are separated by 10 nucleotides MMP_RS04815 and MMP_RS04820 are separated by 16 nucleotides MMP_RS04820 and MMP_RS04825 are separated by 25 nucleotides MMP_RS04825 and MMP_RS04830 are separated by 70 nucleotides
MMP_RS04810: MMP_RS04810 - chemotaxis protein CheA, at 914,756 to 917,518
_RS04810
MMP_RS04815: MMP_RS04815 - chemotaxis protein CheD, at 917,529 to 917,993
_RS04815
MMP_RS04820: MMP_RS04820 - methyl-accepting chemotaxis protein, at 918,010 to 919,413
_RS04820
MMP_RS04825: MMP_RS04825 - protein-glutamate O-methyltransferase CheR, at 919,439 to 920,251
_RS04825
MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930
_RS04830
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1
2 at 917.034 kb on - strand, within MMP_RS04810 at 917.035 kb on + strand, within MMP_RS04810 at 917.122 kb on + strand, within MMP_RS04810 at 917.125 kb on - strand, within MMP_RS04810 at 917.125 kb on - strand, within MMP_RS04810 at 917.126 kb on + strand, within MMP_RS04810 at 917.134 kb on - strand, within MMP_RS04810 at 917.135 kb on + strand, within MMP_RS04810 at 917.136 kb on - strand, within MMP_RS04810 at 917.157 kb on - strand, within MMP_RS04810 at 917.167 kb on - strand, within MMP_RS04810 at 917.167 kb on - strand, within MMP_RS04810 at 917.171 kb on - strand, within MMP_RS04810 at 917.172 kb on + strand, within MMP_RS04810 at 917.306 kb on + strand at 917.306 kb on + strand at 917.306 kb on + strand at 917.336 kb on - strand at 917.337 kb on + strand at 917.344 kb on + strand at 917.392 kb on - strand at 917.416 kb on + strand at 917.433 kb on - strand at 917.433 kb on - strand at 917.470 kb on + strand at 917.488 kb on + strand at 917.618 kb on + strand, within MMP_RS04815 at 917.660 kb on + strand, within MMP_RS04815 at 917.660 kb on + strand, within MMP_RS04815 at 917.706 kb on - strand, within MMP_RS04815 at 917.715 kb on + strand, within MMP_RS04815 at 917.814 kb on + strand, within MMP_RS04815 at 917.822 kb on - strand, within MMP_RS04815 at 917.822 kb on - strand, within MMP_RS04815 at 917.822 kb on - strand, within MMP_RS04815 at 917.927 kb on - strand, within MMP_RS04815 at 917.927 kb on - strand, within MMP_RS04815 at 917.943 kb on + strand, within MMP_RS04815 at 917.959 kb on - strand at 917.988 kb on + strand at 917.990 kb on + strand at 917.991 kb on - strand at 917.992 kb on + strand at 917.998 kb on + strand at 917.998 kb on + strand at 918.005 kb on - strand at 918.005 kb on - strand at 918.010 kb on + strand at 918.010 kb on + strand at 918.010 kb on + strand at 918.029 kb on + strand at 918.029 kb on + strand at 918.042 kb on + strand at 918.045 kb on - strand at 918.046 kb on + strand at 918.093 kb on + strand at 918.121 kb on + strand at 918.122 kb on - strand at 918.123 kb on + strand at 918.123 kb on + strand at 918.139 kb on + strand at 918.139 kb on + strand at 918.159 kb on - strand, within MMP_RS04820 at 918.176 kb on - strand, within MMP_RS04820 at 918.176 kb on - strand, within MMP_RS04820 at 918.177 kb on + strand, within MMP_RS04820 at 918.177 kb on + strand, within MMP_RS04820 at 918.206 kb on - strand, within MMP_RS04820 at 918.206 kb on - strand, within MMP_RS04820 at 918.206 kb on - strand, within MMP_RS04820 at 918.206 kb on - strand, within MMP_RS04820 at 918.276 kb on - strand, within MMP_RS04820 at 918.382 kb on + strand, within MMP_RS04820 at 918.433 kb on - strand, within MMP_RS04820 at 918.433 kb on - strand, within MMP_RS04820 at 918.450 kb on + strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.453 kb on - strand, within MMP_RS04820 at 918.454 kb on + strand, within MMP_RS04820 at 918.467 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.470 kb on - strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.471 kb on + strand, within MMP_RS04820 at 918.488 kb on - strand, within MMP_RS04820 at 918.644 kb on - strand, within MMP_RS04820 at 918.644 kb on - strand, within MMP_RS04820 at 918.965 kb on - strand, within MMP_RS04820 at 918.982 kb on + strand, within MMP_RS04820 at 919.020 kb on - strand, within MMP_RS04820 at 919.027 kb on + strand, within MMP_RS04820 at 919.043 kb on - strand, within MMP_RS04820 at 919.062 kb on - strand, within MMP_RS04820 at 919.074 kb on + strand, within MMP_RS04820 at 919.110 kb on - strand, within MMP_RS04820 at 919.149 kb on + strand, within MMP_RS04820 at 919.149 kb on + strand, within MMP_RS04820 at 919.296 kb on + strand at 919.359 kb on + strand at 919.391 kb on - strand at 919.392 kb on + strand at 919.392 kb on + strand at 919.396 kb on + strand at 919.412 kb on + strand at 919.412 kb on + strand at 919.489 kb on - strand at 919.539 kb on + strand, within MMP_RS04825 at 919.543 kb on + strand, within MMP_RS04825 at 919.581 kb on + strand, within MMP_RS04825 at 919.595 kb on + strand, within MMP_RS04825 at 919.609 kb on + strand, within MMP_RS04825 at 919.616 kb on + strand, within MMP_RS04825 at 919.616 kb on + strand, within MMP_RS04825 at 919.624 kb on - strand, within MMP_RS04825 at 919.663 kb on - strand, within MMP_RS04825 at 919.663 kb on - strand, within MMP_RS04825 at 919.746 kb on - strand, within MMP_RS04825 at 919.747 kb on + strand, within MMP_RS04825 at 919.750 kb on - strand, within MMP_RS04825 at 919.854 kb on + strand, within MMP_RS04825 at 919.972 kb on - strand, within MMP_RS04825 at 919.980 kb on + strand, within MMP_RS04825 at 920.014 kb on + strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.054 kb on + strand, within MMP_RS04825 at 920.060 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.162 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.170 kb on + strand at 920.170 kb on + strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.196 kb on + strand at 920.201 kb on - strand at 920.225 kb on + strand at 920.238 kb on - strand at 920.238 kb on - strand at 920.242 kb on - strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.267 kb on + strand at 920.267 kb on + strand at 920.294 kb on + strand at 920.316 kb on - strand at 920.319 kb on - strand at 920.319 kb on - strand at 920.323 kb on - strand at 920.358 kb on - strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.402 kb on - strand, within MMP_RS04830 at 920.402 kb on - strand, within MMP_RS04830 at 920.403 kb on + strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.407 kb on + strand, within MMP_RS04830 at 920.411 kb on - strand, within MMP_RS04830
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 917,034 - MMP_RS04810 0.82 +0.6 917,035 + MMP_RS04810 0.82 +1.0 917,122 + MMP_RS04810 0.86 +0.0 917,125 - MMP_RS04810 0.86 -0.1 917,125 - MMP_RS04810 0.86 +0.3 917,126 + MMP_RS04810 0.86 +0.4 917,134 - MMP_RS04810 0.86 -0.3 917,135 + MMP_RS04810 0.86 +0.1 917,136 - MMP_RS04810 0.86 +0.6 917,157 - MMP_RS04810 0.87 -0.4 917,167 - MMP_RS04810 0.87 -0.3 917,167 - MMP_RS04810 0.87 -0.3 917,171 - MMP_RS04810 0.87 -0.1 917,172 + MMP_RS04810 0.87 -0.2 917,306 + -0.4 917,306 + +0.2 917,306 + -0.1 917,336 - -0.3 917,337 + +0.2 917,344 + +0.4 917,392 - +0.3 917,416 + -0.4 917,433 - -0.4 917,433 - +0.7 917,470 + -0.5 917,488 + +0.7 917,618 + MMP_RS04815 0.19 +0.3 917,660 + MMP_RS04815 0.28 -0.6 917,660 + MMP_RS04815 0.28 +0.7 917,706 - MMP_RS04815 0.38 -0.1 917,715 + MMP_RS04815 0.40 +0.6 917,814 + MMP_RS04815 0.61 -0.2 917,822 - MMP_RS04815 0.63 +1.8 917,822 - MMP_RS04815 0.63 +1.1 917,822 - MMP_RS04815 0.63 +0.4 917,927 - MMP_RS04815 0.86 +0.8 917,927 - MMP_RS04815 0.86 +0.5 917,943 + MMP_RS04815 0.89 -0.0 917,959 - +0.8 917,988 + +0.2 917,990 + +0.1 917,991 - -0.3 917,992 + +0.3 917,998 + -0.4 917,998 + -0.6 918,005 - +0.3 918,005 - +1.2 918,010 + -0.3 918,010 + -0.2 918,010 + +0.9 918,029 + -0.2 918,029 + +0.5 918,042 + -0.5 918,045 - -0.3 918,046 + +1.4 918,093 + +0.8 918,121 + +0.3 918,122 - +0.5 918,123 + +0.6 918,123 + +0.5 918,139 + -0.5 918,139 + -0.4 918,159 - MMP_RS04820 0.11 +1.0 918,176 - MMP_RS04820 0.12 -0.2 918,176 - MMP_RS04820 0.12 -0.6 918,177 + MMP_RS04820 0.12 -0.3 918,177 + MMP_RS04820 0.12 -0.3 918,206 - MMP_RS04820 0.14 -0.8 918,206 - MMP_RS04820 0.14 -0.1 918,206 - MMP_RS04820 0.14 -0.4 918,206 - MMP_RS04820 0.14 -0.1 918,276 - MMP_RS04820 0.19 -0.7 918,382 + MMP_RS04820 0.26 -0.1 918,433 - MMP_RS04820 0.30 -0.6 918,433 - MMP_RS04820 0.30 +0.3 918,450 + MMP_RS04820 0.31 -0.4 918,453 - MMP_RS04820 0.32 +1.1 918,453 - MMP_RS04820 0.32 -0.2 918,453 - MMP_RS04820 0.32 -0.4 918,453 - MMP_RS04820 0.32 +0.3 918,454 + MMP_RS04820 0.32 +0.1 918,467 - MMP_RS04820 0.33 -0.4 918,470 - MMP_RS04820 0.33 +0.3 918,470 - MMP_RS04820 0.33 +0.2 918,470 - MMP_RS04820 0.33 +0.1 918,470 - MMP_RS04820 0.33 +0.3 918,470 - MMP_RS04820 0.33 +0.2 918,471 + MMP_RS04820 0.33 +0.2 918,471 + MMP_RS04820 0.33 -0.5 918,471 + MMP_RS04820 0.33 -0.3 918,488 - MMP_RS04820 0.34 -1.0 918,644 - MMP_RS04820 0.45 -0.4 918,644 - MMP_RS04820 0.45 -0.4 918,965 - MMP_RS04820 0.68 -0.5 918,982 + MMP_RS04820 0.69 -0.6 919,020 - MMP_RS04820 0.72 -0.5 919,027 + MMP_RS04820 0.72 -0.3 919,043 - MMP_RS04820 0.74 -0.1 919,062 - MMP_RS04820 0.75 -0.3 919,074 + MMP_RS04820 0.76 +0.0 919,110 - MMP_RS04820 0.78 +0.7 919,149 + MMP_RS04820 0.81 -0.8 919,149 + MMP_RS04820 0.81 -0.2 919,296 + +1.0 919,359 + +1.0 919,391 - +0.3 919,392 + +0.2 919,392 + -0.7 919,396 + -0.0 919,412 + -0.1 919,412 + +0.7 919,489 - +0.4 919,539 + MMP_RS04825 0.12 +0.1 919,543 + MMP_RS04825 0.13 -0.4 919,581 + MMP_RS04825 0.17 +0.4 919,595 + MMP_RS04825 0.19 +1.5 919,609 + MMP_RS04825 0.21 -0.5 919,616 + MMP_RS04825 0.22 -0.0 919,616 + MMP_RS04825 0.22 -0.3 919,624 - MMP_RS04825 0.23 +0.3 919,663 - MMP_RS04825 0.28 +0.1 919,663 - MMP_RS04825 0.28 -0.0 919,746 - MMP_RS04825 0.38 -0.9 919,747 + MMP_RS04825 0.38 +0.5 919,750 - MMP_RS04825 0.38 +0.0 919,854 + MMP_RS04825 0.51 -0.6 919,972 - MMP_RS04825 0.66 -0.1 919,980 + MMP_RS04825 0.67 -0.9 920,014 + MMP_RS04825 0.71 +0.3 920,048 - MMP_RS04825 0.75 +1.1 920,048 - MMP_RS04825 0.75 -0.1 920,054 + MMP_RS04825 0.76 +0.1 920,060 + MMP_RS04825 0.76 -0.0 920,101 + MMP_RS04825 0.81 +0.1 920,101 + MMP_RS04825 0.81 +0.2 920,109 - MMP_RS04825 0.82 +0.5 920,109 - MMP_RS04825 0.82 +0.2 920,162 - MMP_RS04825 0.89 +0.2 920,169 - MMP_RS04825 0.90 -0.2 920,169 - MMP_RS04825 0.90 +0.7 920,170 + +0.1 920,170 + +0.3 920,173 - +0.2 920,173 - +0.8 920,173 - +0.9 920,174 + +0.0 920,174 + +0.8 920,174 + +1.1 920,196 + -0.2 920,201 - -0.2 920,225 + -0.3 920,238 - +0.0 920,238 - +0.5 920,242 - +0.2 920,243 + -0.1 920,243 + +0.1 920,243 + +0.7 920,266 - -0.4 920,266 - +0.2 920,266 - +0.3 920,266 - -0.4 920,267 + -0.1 920,267 + +0.1 920,294 + -0.2 920,316 - -0.5 920,319 - +0.7 920,319 - -0.7 920,323 - +0.5 920,358 - -0.4 920,359 + -0.1 920,359 + -0.2 920,359 + +0.1 920,402 - MMP_RS04830 0.13 +0.6 920,402 - MMP_RS04830 0.13 +0.7 920,403 + MMP_RS04830 0.13 +0.2 920,406 - MMP_RS04830 0.14 +0.3 920,406 - MMP_RS04830 0.14 +1.4 920,407 + MMP_RS04830 0.14 +0.4 920,411 - MMP_RS04830 0.15 -0.0
Or see this region's nucleotide sequence