Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02810 and MMP_RS02815 are separated by 114 nucleotides MMP_RS02815 and MMP_RS02820 are separated by 6 nucleotides MMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides
MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262
_RS02810
MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952
_RS02815
MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189
_RS02820
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
Position (kb) 538
539 Strain fitness (log2 ratio) -1
0
1 at 537.406 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.638 kb on + strand, within MMP_RS02810 at 537.705 kb on + strand, within MMP_RS02810 at 537.976 kb on - strand, within MMP_RS02810 at 538.472 kb on - strand, within MMP_RS02815 at 538.847 kb on + strand, within MMP_RS02815 at 538.976 kb on - strand at 538.977 kb on + strand at 539.376 kb on - strand, within MMP_RS02825 at 539.405 kb on + strand, within MMP_RS02825 at 539.431 kb on - strand, within MMP_RS02825 at 539.435 kb on + strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.439 kb on + strand, within MMP_RS02825 at 539.445 kb on - strand, within MMP_RS02825 at 539.456 kb on + strand, within MMP_RS02825 at 539.614 kb on + strand, within MMP_RS02825 at 539.724 kb on - strand, within MMP_RS02825 at 539.725 kb on + strand, within MMP_RS02825 at 539.766 kb on - strand, within MMP_RS02825 at 539.930 kb on - strand, within MMP_RS02825 at 539.931 kb on + strand, within MMP_RS02825
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 537,406 - MMP_RS02810 0.42 -0.5 537,450 - MMP_RS02810 0.45 +0.1 537,450 - MMP_RS02810 0.45 +0.1 537,638 + MMP_RS02810 0.57 +0.5 537,705 + MMP_RS02810 0.62 -0.3 537,976 - MMP_RS02810 0.80 -0.4 538,472 - MMP_RS02815 0.16 -0.1 538,847 + MMP_RS02815 0.82 -0.3 538,976 - +0.3 538,977 + -0.5 539,376 - MMP_RS02825 0.17 -0.4 539,405 + MMP_RS02825 0.19 -0.2 539,431 - MMP_RS02825 0.22 -0.3 539,435 + MMP_RS02825 0.22 -0.1 539,438 - MMP_RS02825 0.23 -0.3 539,438 - MMP_RS02825 0.23 -0.3 539,438 - MMP_RS02825 0.23 +0.2 539,438 - MMP_RS02825 0.23 +0.2 539,438 - MMP_RS02825 0.23 +0.0 539,439 + MMP_RS02825 0.23 -0.2 539,445 - MMP_RS02825 0.23 +0.6 539,456 + MMP_RS02825 0.24 +0.1 539,614 + MMP_RS02825 0.39 -0.3 539,724 - MMP_RS02825 0.49 -0.2 539,725 + MMP_RS02825 0.49 -0.5 539,766 - MMP_RS02825 0.53 -0.0 539,930 - MMP_RS02825 0.68 -0.2 539,931 + MMP_RS02825 0.68 +1.0
Or see this region's nucleotide sequence