Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01120 and MMP_RS01125 are separated by 42 nucleotides MMP_RS01125 and MMP_RS01130 are separated by 69 nucleotides MMP_RS01130 and MMP_RS01135 are separated by 526 nucleotides
MMP_RS01120: MMP_RS01120 - permease, at 210,169 to 211,125
_RS01120
MMP_RS01125: MMP_RS01125 - thioredoxin family protein, at 211,168 to 211,401
_RS01125
MMP_RS01130: MMP_RS01130 - flavoprotein, at 211,471 to 212,001
_RS01130
MMP_RS01135: MMP_RS01135 - molybdate ABC transporter substrate-binding protein, at 212,528 to 213,331
_RS01135
Position (kb) 211
212
213 Strain fitness (log2 ratio) -1
0
1 at 210.624 kb on - strand, within MMP_RS01120 at 210.664 kb on - strand, within MMP_RS01120 at 210.669 kb on + strand, within MMP_RS01120 at 211.030 kb on + strand at 211.184 kb on - strand at 211.217 kb on + strand, within MMP_RS01125 at 211.253 kb on - strand, within MMP_RS01125 at 211.254 kb on + strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.305 kb on + strand, within MMP_RS01125 at 211.325 kb on - strand, within MMP_RS01125 at 211.416 kb on + strand at 211.429 kb on - strand at 211.429 kb on - strand at 211.455 kb on - strand at 211.455 kb on - strand at 211.456 kb on + strand at 211.456 kb on + strand at 211.457 kb on - strand at 211.457 kb on - strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.496 kb on - strand at 211.497 kb on + strand at 211.500 kb on - strand at 211.678 kb on - strand, within MMP_RS01130 at 211.678 kb on - strand, within MMP_RS01130 at 211.746 kb on - strand, within MMP_RS01130 at 211.747 kb on + strand, within MMP_RS01130 at 211.770 kb on - strand, within MMP_RS01130 at 211.773 kb on + strand, within MMP_RS01130 at 211.806 kb on - strand, within MMP_RS01130 at 211.807 kb on + strand, within MMP_RS01130 at 211.880 kb on - strand, within MMP_RS01130 at 212.008 kb on - strand at 212.008 kb on - strand at 212.009 kb on + strand at 212.012 kb on - strand at 212.013 kb on + strand at 212.017 kb on + strand at 212.018 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.177 kb on - strand at 212.281 kb on - strand at 212.286 kb on - strand at 212.454 kb on - strand at 212.454 kb on - strand at 212.454 kb on - strand at 212.457 kb on + strand at 212.457 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.514 kb on + strand at 212.551 kb on + strand at 212.812 kb on - strand, within MMP_RS01135 at 212.823 kb on - strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.926 kb on - strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.944 kb on + strand, within MMP_RS01135 at 212.977 kb on - strand, within MMP_RS01135
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 210,624 - MMP_RS01120 0.48 +0.5 210,664 - MMP_RS01120 0.52 +1.1 210,669 + MMP_RS01120 0.52 -0.3 211,030 + +0.2 211,184 - -0.1 211,217 + MMP_RS01125 0.21 +0.3 211,253 - MMP_RS01125 0.36 -0.4 211,254 + MMP_RS01125 0.37 -0.1 211,300 - MMP_RS01125 0.56 -0.6 211,300 - MMP_RS01125 0.56 +0.5 211,300 - MMP_RS01125 0.56 +0.4 211,301 + MMP_RS01125 0.57 +0.3 211,301 + MMP_RS01125 0.57 -0.0 211,305 + MMP_RS01125 0.59 +0.1 211,325 - MMP_RS01125 0.67 -0.5 211,416 + +0.1 211,429 - -0.4 211,429 - -0.0 211,455 - +0.8 211,455 - +0.3 211,456 + -0.1 211,456 + +0.4 211,457 - -0.1 211,457 - +0.1 211,458 + -0.3 211,458 + +0.3 211,458 + -0.7 211,458 + -0.2 211,496 - +0.6 211,497 + -0.1 211,500 - -0.7 211,678 - MMP_RS01130 0.39 -0.5 211,678 - MMP_RS01130 0.39 -0.1 211,746 - MMP_RS01130 0.52 +0.3 211,747 + MMP_RS01130 0.52 -0.3 211,770 - MMP_RS01130 0.56 -0.6 211,773 + MMP_RS01130 0.57 -0.2 211,806 - MMP_RS01130 0.63 +0.4 211,807 + MMP_RS01130 0.63 -0.1 211,880 - MMP_RS01130 0.77 -0.4 212,008 - +0.4 212,008 - -0.2 212,009 + -0.1 212,012 - -0.1 212,013 + -0.2 212,017 + -0.5 212,018 - -0.6 212,129 - -0.7 212,129 - +0.8 212,129 - +0.1 212,177 - +0.6 212,281 - +0.6 212,286 - +0.2 212,454 - +0.1 212,454 - -0.1 212,454 - -0.5 212,457 + -0.6 212,457 + +0.6 212,512 + -0.4 212,512 + -0.1 212,512 + -0.2 212,514 + -0.8 212,551 + -0.0 212,812 - MMP_RS01135 0.35 -0.7 212,823 - MMP_RS01135 0.37 -0.4 212,830 + MMP_RS01135 0.38 +0.0 212,830 + MMP_RS01135 0.38 +0.0 212,830 + MMP_RS01135 0.38 -0.1 212,926 - MMP_RS01135 0.50 -0.1 212,927 + MMP_RS01135 0.50 -0.0 212,927 + MMP_RS01135 0.50 +0.3 212,944 + MMP_RS01135 0.52 +0.2 212,977 - MMP_RS01135 0.56 -0.2
Or see this region's nucleotide sequence