Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00325 and MMJJ_RS00330 are separated by 4 nucleotides MMJJ_RS00330 and MMJJ_RS00335 are separated by 43 nucleotides MMJJ_RS00335 and MMJJ_RS00340 are separated by 10 nucleotides
MMJJ_RS00325: MMJJ_RS00325 - chemotaxis protein CheA, at 61,348 to 64,110
_RS00325
MMJJ_RS00330: MMJJ_RS00330 - chemotaxis response regulator protein-glutamate methylesterase, at 64,115 to 65,212
_RS00330
MMJJ_RS00335: MMJJ_RS00335 - chemotaxis protein CheW, at 65,256 to 65,699
_RS00335
MMJJ_RS00340: MMJJ_RS00340 - tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY, at 65,710 to 66,306
_RS00340
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1 at 63.130 kb on - strand, within MMJJ_RS00325 at 63.130 kb on - strand, within MMJJ_RS00325 at 63.131 kb on + strand, within MMJJ_RS00325 at 63.131 kb on + strand, within MMJJ_RS00325 at 63.200 kb on + strand, within MMJJ_RS00325 at 63.205 kb on + strand, within MMJJ_RS00325 at 63.225 kb on - strand, within MMJJ_RS00325 at 63.226 kb on + strand, within MMJJ_RS00325 at 63.232 kb on - strand, within MMJJ_RS00325 at 63.261 kb on - strand, within MMJJ_RS00325 at 63.262 kb on + strand, within MMJJ_RS00325 at 63.262 kb on + strand, within MMJJ_RS00325 at 63.281 kb on + strand, within MMJJ_RS00325 at 63.297 kb on + strand, within MMJJ_RS00325 at 63.301 kb on + strand, within MMJJ_RS00325 at 63.404 kb on + strand, within MMJJ_RS00325 at 63.442 kb on + strand, within MMJJ_RS00325 at 63.449 kb on + strand, within MMJJ_RS00325 at 63.574 kb on + strand, within MMJJ_RS00325 at 63.577 kb on - strand, within MMJJ_RS00325 at 63.578 kb on + strand, within MMJJ_RS00325 at 63.578 kb on + strand, within MMJJ_RS00325 at 63.578 kb on + strand, within MMJJ_RS00325 at 63.607 kb on + strand, within MMJJ_RS00325 at 63.628 kb on + strand, within MMJJ_RS00325 at 63.681 kb on - strand, within MMJJ_RS00325 at 63.681 kb on - strand, within MMJJ_RS00325 at 63.682 kb on + strand, within MMJJ_RS00325 at 63.741 kb on - strand, within MMJJ_RS00325 at 63.742 kb on + strand, within MMJJ_RS00325 at 63.780 kb on - strand, within MMJJ_RS00325 at 63.841 kb on - strand at 63.841 kb on - strand at 63.887 kb on - strand at 63.887 kb on - strand at 63.887 kb on - strand at 63.888 kb on + strand at 63.897 kb on - strand at 63.925 kb on - strand at 63.925 kb on - strand at 63.925 kb on - strand at 63.926 kb on + strand at 63.926 kb on + strand at 63.926 kb on + strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.927 kb on - strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 63.928 kb on + strand at 64.035 kb on - strand at 64.036 kb on + strand at 64.036 kb on + strand at 64.081 kb on - strand at 64.081 kb on - strand at 64.082 kb on + strand at 64.082 kb on + strand at 64.090 kb on + strand at 64.091 kb on - strand at 64.113 kb on - strand at 64.114 kb on + strand at 64.159 kb on - strand at 64.163 kb on - strand at 64.180 kb on - strand at 64.188 kb on + strand at 64.225 kb on - strand, within MMJJ_RS00330 at 64.255 kb on - strand, within MMJJ_RS00330 at 64.255 kb on - strand, within MMJJ_RS00330 at 64.255 kb on - strand, within MMJJ_RS00330 at 64.310 kb on + strand, within MMJJ_RS00330 at 64.347 kb on - strand, within MMJJ_RS00330 at 64.360 kb on + strand, within MMJJ_RS00330 at 64.370 kb on - strand, within MMJJ_RS00330 at 64.408 kb on - strand, within MMJJ_RS00330 at 64.421 kb on - strand, within MMJJ_RS00330 at 64.422 kb on + strand, within MMJJ_RS00330 at 64.422 kb on + strand, within MMJJ_RS00330 at 64.428 kb on - strand, within MMJJ_RS00330 at 64.428 kb on - strand, within MMJJ_RS00330 at 64.428 kb on - strand, within MMJJ_RS00330 at 64.429 kb on + strand, within MMJJ_RS00330 at 64.429 kb on + strand, within MMJJ_RS00330 at 64.429 kb on + strand, within MMJJ_RS00330 at 64.429 kb on + strand, within MMJJ_RS00330 at 64.429 kb on + strand, within MMJJ_RS00330 at 64.430 kb on - strand, within MMJJ_RS00330 at 64.430 kb on - strand, within MMJJ_RS00330 at 64.430 kb on - strand, within MMJJ_RS00330 at 64.430 kb on - strand, within MMJJ_RS00330 at 64.431 kb on + strand, within MMJJ_RS00330 at 64.431 kb on + strand, within MMJJ_RS00330 at 64.431 kb on + strand, within MMJJ_RS00330 at 64.676 kb on - strand, within MMJJ_RS00330 at 64.676 kb on - strand, within MMJJ_RS00330 at 64.677 kb on + strand, within MMJJ_RS00330 at 64.680 kb on + strand, within MMJJ_RS00330 at 64.683 kb on + strand, within MMJJ_RS00330 at 64.747 kb on - strand, within MMJJ_RS00330 at 64.777 kb on - strand, within MMJJ_RS00330 at 64.808 kb on - strand, within MMJJ_RS00330 at 64.808 kb on - strand, within MMJJ_RS00330 at 64.809 kb on + strand, within MMJJ_RS00330 at 64.931 kb on - strand, within MMJJ_RS00330 at 64.932 kb on + strand, within MMJJ_RS00330 at 64.936 kb on - strand, within MMJJ_RS00330 at 65.012 kb on + strand, within MMJJ_RS00330 at 65.054 kb on + strand, within MMJJ_RS00330 at 65.058 kb on + strand, within MMJJ_RS00330 at 65.186 kb on - strand at 65.231 kb on - strand at 65.305 kb on + strand, within MMJJ_RS00335 at 65.309 kb on - strand, within MMJJ_RS00335 at 65.338 kb on - strand, within MMJJ_RS00335 at 65.338 kb on - strand, within MMJJ_RS00335 at 65.404 kb on + strand, within MMJJ_RS00335 at 65.427 kb on - strand, within MMJJ_RS00335 at 65.463 kb on - strand, within MMJJ_RS00335 at 65.463 kb on - strand, within MMJJ_RS00335 at 65.464 kb on + strand, within MMJJ_RS00335 at 65.542 kb on + strand, within MMJJ_RS00335 at 65.562 kb on + strand, within MMJJ_RS00335 at 65.637 kb on - strand, within MMJJ_RS00335 at 65.680 kb on + strand at 65.721 kb on - strand at 65.721 kb on - strand at 65.722 kb on + strand at 65.726 kb on + strand at 65.726 kb on + strand at 65.726 kb on + strand at 65.734 kb on + strand at 65.746 kb on - strand at 65.746 kb on - strand at 65.747 kb on + strand at 65.747 kb on + strand at 65.747 kb on + strand at 65.785 kb on - strand, within MMJJ_RS00340 at 65.912 kb on + strand, within MMJJ_RS00340 at 65.959 kb on + strand, within MMJJ_RS00340 at 65.959 kb on + strand, within MMJJ_RS00340 at 65.962 kb on + strand, within MMJJ_RS00340 at 66.141 kb on - strand, within MMJJ_RS00340 at 66.142 kb on + strand, within MMJJ_RS00340 at 66.156 kb on - strand, within MMJJ_RS00340 at 66.212 kb on + strand, within MMJJ_RS00340
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE remove 63,130 - MMJJ_RS00325 0.64 -0.2 63,130 - MMJJ_RS00325 0.64 -0.5 63,131 + MMJJ_RS00325 0.65 -0.0 63,131 + MMJJ_RS00325 0.65 -0.9 63,200 + MMJJ_RS00325 0.67 +0.6 63,205 + MMJJ_RS00325 0.67 +0.3 63,225 - MMJJ_RS00325 0.68 +0.1 63,226 + MMJJ_RS00325 0.68 +0.2 63,232 - MMJJ_RS00325 0.68 -0.7 63,261 - MMJJ_RS00325 0.69 +0.3 63,262 + MMJJ_RS00325 0.69 -0.4 63,262 + MMJJ_RS00325 0.69 +0.4 63,281 + MMJJ_RS00325 0.70 -0.7 63,297 + MMJJ_RS00325 0.71 -0.2 63,301 + MMJJ_RS00325 0.71 -0.7 63,404 + MMJJ_RS00325 0.74 +0.5 63,442 + MMJJ_RS00325 0.76 -0.2 63,449 + MMJJ_RS00325 0.76 -0.3 63,574 + MMJJ_RS00325 0.81 +0.7 63,577 - MMJJ_RS00325 0.81 +0.7 63,578 + MMJJ_RS00325 0.81 -0.8 63,578 + MMJJ_RS00325 0.81 -0.1 63,578 + MMJJ_RS00325 0.81 +0.1 63,607 + MMJJ_RS00325 0.82 -0.1 63,628 + MMJJ_RS00325 0.83 -0.4 63,681 - MMJJ_RS00325 0.84 +0.8 63,681 - MMJJ_RS00325 0.84 -0.1 63,682 + MMJJ_RS00325 0.84 +0.7 63,741 - MMJJ_RS00325 0.87 -1.3 63,742 + MMJJ_RS00325 0.87 -0.5 63,780 - MMJJ_RS00325 0.88 -0.3 63,841 - -0.2 63,841 - +0.5 63,887 - -0.3 63,887 - -0.0 63,887 - +0.0 63,888 + -0.2 63,897 - +0.1 63,925 - -0.3 63,925 - -0.1 63,925 - -0.0 63,926 + +0.2 63,926 + -0.5 63,926 + +0.1 63,927 - +0.7 63,927 - -0.4 63,927 - -1.5 63,927 - -2.1 63,927 - -0.9 63,927 - -0.7 63,927 - -0.3 63,927 - +0.3 63,927 - -0.3 63,927 - +1.1 63,927 - -0.3 63,927 - -0.0 63,928 + -0.1 63,928 + -1.2 63,928 + +0.0 63,928 + -0.1 63,928 + -0.4 63,928 + +0.2 63,928 + +0.4 63,928 + -0.7 63,928 + -0.7 64,035 - +0.1 64,036 + +0.1 64,036 + +1.3 64,081 - +1.1 64,081 - -0.1 64,082 + -0.3 64,082 + +0.5 64,090 + -0.5 64,091 - +0.1 64,113 - +0.2 64,114 + +0.6 64,159 - +0.1 64,163 - +0.3 64,180 - -0.0 64,188 + +0.2 64,225 - MMJJ_RS00330 0.10 +0.5 64,255 - MMJJ_RS00330 0.13 +0.1 64,255 - MMJJ_RS00330 0.13 +0.3 64,255 - MMJJ_RS00330 0.13 -0.3 64,310 + MMJJ_RS00330 0.18 +0.4 64,347 - MMJJ_RS00330 0.21 -1.6 64,360 + MMJJ_RS00330 0.22 +0.2 64,370 - MMJJ_RS00330 0.23 -0.1 64,408 - MMJJ_RS00330 0.27 -0.5 64,421 - MMJJ_RS00330 0.28 +0.1 64,422 + MMJJ_RS00330 0.28 -0.0 64,422 + MMJJ_RS00330 0.28 +0.4 64,428 - MMJJ_RS00330 0.29 +0.6 64,428 - MMJJ_RS00330 0.29 +0.8 64,428 - MMJJ_RS00330 0.29 +0.5 64,429 + MMJJ_RS00330 0.29 +0.3 64,429 + MMJJ_RS00330 0.29 +1.1 64,429 + MMJJ_RS00330 0.29 -0.2 64,429 + MMJJ_RS00330 0.29 -0.5 64,429 + MMJJ_RS00330 0.29 -1.3 64,430 - MMJJ_RS00330 0.29 -0.1 64,430 - MMJJ_RS00330 0.29 +1.6 64,430 - MMJJ_RS00330 0.29 -0.2 64,430 - MMJJ_RS00330 0.29 -0.2 64,431 + MMJJ_RS00330 0.29 -1.0 64,431 + MMJJ_RS00330 0.29 +0.2 64,431 + MMJJ_RS00330 0.29 -0.2 64,676 - MMJJ_RS00330 0.51 -0.9 64,676 - MMJJ_RS00330 0.51 -0.2 64,677 + MMJJ_RS00330 0.51 +0.2 64,680 + MMJJ_RS00330 0.51 +0.4 64,683 + MMJJ_RS00330 0.52 +0.2 64,747 - MMJJ_RS00330 0.58 +1.1 64,777 - MMJJ_RS00330 0.60 +0.6 64,808 - MMJJ_RS00330 0.63 +0.3 64,808 - MMJJ_RS00330 0.63 +0.3 64,809 + MMJJ_RS00330 0.63 +0.5 64,931 - MMJJ_RS00330 0.74 +0.1 64,932 + MMJJ_RS00330 0.74 +0.1 64,936 - MMJJ_RS00330 0.75 +0.5 65,012 + MMJJ_RS00330 0.82 -0.2 65,054 + MMJJ_RS00330 0.86 +0.3 65,058 + MMJJ_RS00330 0.86 +0.4 65,186 - -0.5 65,231 - +0.6 65,305 + MMJJ_RS00335 0.11 +0.6 65,309 - MMJJ_RS00335 0.12 +0.1 65,338 - MMJJ_RS00335 0.18 -0.8 65,338 - MMJJ_RS00335 0.18 +0.6 65,404 + MMJJ_RS00335 0.33 +0.8 65,427 - MMJJ_RS00335 0.39 -1.1 65,463 - MMJJ_RS00335 0.47 +0.6 65,463 - MMJJ_RS00335 0.47 -0.1 65,464 + MMJJ_RS00335 0.47 -0.2 65,542 + MMJJ_RS00335 0.64 +0.1 65,562 + MMJJ_RS00335 0.69 +0.1 65,637 - MMJJ_RS00335 0.86 +0.5 65,680 + -0.1 65,721 - -0.0 65,721 - -0.9 65,722 + +0.4 65,726 + +0.1 65,726 + +0.7 65,726 + +0.1 65,734 + -0.3 65,746 - -0.5 65,746 - -0.2 65,747 + +0.7 65,747 + -0.2 65,747 + -0.5 65,785 - MMJJ_RS00340 0.13 +0.2 65,912 + MMJJ_RS00340 0.34 +1.7 65,959 + MMJJ_RS00340 0.42 -1.1 65,959 + MMJJ_RS00340 0.42 -0.5 65,962 + MMJJ_RS00340 0.42 -0.1 66,141 - MMJJ_RS00340 0.72 -0.2 66,142 + MMJJ_RS00340 0.72 +0.2 66,156 - MMJJ_RS00340 0.75 +0.3 66,212 + MMJJ_RS00340 0.84 -0.4
Or see this region's nucleotide sequence