Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13905

Experiment: R2A pH5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A pH5
3,102,815	+				+1.0
3,102,815	+				+0.6
3,102,815	+				-0.8
3,102,815	+				-0.4
3,102,816	-				+0.2
3,102,816	-				-0.1
3,102,816	-				+1.4
3,102,941	+		LRK54_RS13900	0.18	+0.9
3,102,941	+		LRK54_RS13900	0.18	-0.9
3,102,941	+		LRK54_RS13900	0.18	-0.4
3,102,941	+		LRK54_RS13900	0.18	-0.6
3,102,941	+		LRK54_RS13900	0.18	+1.0
3,102,941	+		LRK54_RS13900	0.18	+1.0
3,102,941	+		LRK54_RS13900	0.18	-1.5
3,102,941	+		LRK54_RS13900	0.18	-0.4
3,102,942	-		LRK54_RS13900	0.18	-0.4
3,102,942	-		LRK54_RS13900	0.18	+0.8
3,102,942	-		LRK54_RS13900	0.18	-0.1
3,102,942	-		LRK54_RS13900	0.18	-1.8
3,102,942	-		LRK54_RS13900	0.18	-0.5
3,102,942	-		LRK54_RS13900	0.18	-1.0
3,102,942	-		LRK54_RS13900	0.18	+0.3
3,102,942	-		LRK54_RS13900	0.18	+0.3
3,102,942	-		LRK54_RS13900	0.18	-0.4
3,102,942	-		LRK54_RS13900	0.18	-0.8
3,103,202	+		LRK54_RS13900	0.43	-1.4
3,103,202	+		LRK54_RS13900	0.43	-0.3
3,103,356	-		LRK54_RS13900	0.58	-1.3
3,103,670	+		LRK54_RS13900	0.89	+0.3
3,103,670	+		LRK54_RS13900	0.89	+0.1
3,103,670	+		LRK54_RS13900	0.89	-0.3
3,103,670	+		LRK54_RS13900	0.89	-0.6
3,103,670	+		LRK54_RS13900	0.89	-0.2
3,103,670	+		LRK54_RS13900	0.89	+1.6
3,103,670	+		LRK54_RS13900	0.89	+1.2
3,103,670	+		LRK54_RS13900	0.89	-0.5
3,103,670	+		LRK54_RS13900	0.89	-1.6
3,103,670	+		LRK54_RS13900	0.89	-2.1
3,103,670	+		LRK54_RS13900	0.89	-0.2
3,103,670	+		LRK54_RS13900	0.89	-0.2
3,103,670	+		LRK54_RS13900	0.89	-0.5
3,103,670	+		LRK54_RS13900	0.89	-0.2
3,103,670	+		LRK54_RS13900	0.89	-0.1
3,103,671	-		LRK54_RS13900	0.89	+0.1
3,103,671	-		LRK54_RS13900	0.89	+0.3
3,103,671	-		LRK54_RS13900	0.89	+0.1
3,103,671	-		LRK54_RS13900	0.89	-1.9
3,103,671	-		LRK54_RS13900	0.89	+0.0
3,103,671	-		LRK54_RS13900	0.89	+0.2
3,103,671	-		LRK54_RS13900	0.89	+0.4
3,103,671	-		LRK54_RS13900	0.89	-0.1
3,103,671	-		LRK54_RS13900	0.89	-1.4
3,103,671	-		LRK54_RS13900	0.89	+0.5
3,103,671	-		LRK54_RS13900	0.89	+0.0
3,103,671	-		LRK54_RS13900	0.89	+0.6
3,103,671	-		LRK54_RS13900	0.89	+0.8
3,103,671	-		LRK54_RS13900	0.89	-0.6
3,103,671	-		LRK54_RS13900	0.89	-0.7
3,103,671	-		LRK54_RS13900	0.89	-2.0
3,103,671	-		LRK54_RS13900	0.89	+0.1
3,103,671	-		LRK54_RS13900	0.89	+1.2
3,103,671	-		LRK54_RS13900	0.89	-0.3
3,103,671	-		LRK54_RS13900	0.89	-0.2
3,103,792	+				-0.6
3,103,792	+				-0.1
3,103,792	+				+0.4
3,103,792	+				-0.5
3,103,792	+				-1.1
3,103,792	+				-0.8
3,103,792	+				+1.6
3,103,792	+				-0.2
3,103,792	+				+0.1
3,103,792	+				-0.1
3,103,792	+				+0.6
3,103,792	+				-0.2
3,103,792	+				+0.1
3,103,792	+				-0.6
3,103,793	-				-2.7
3,103,793	-				+0.3
3,103,793	-				-0.1
3,103,793	-				-0.8
3,103,793	-				-0.8
3,103,793	-				-0.7
3,103,793	-				+0.0
3,103,793	-				+0.4
3,103,793	-				-0.6
3,103,793	-				-1.6
3,103,793	-				+0.8
3,103,793	-				-0.9
3,103,793	-				+0.6
3,103,793	-				-0.8
3,103,793	-				-0.7
3,103,793	-				-0.1
3,104,368	+		LRK54_RS13905	0.41	-1.6
3,104,368	+		LRK54_RS13905	0.41	-0.7
3,104,369	-		LRK54_RS13905	0.41	+0.0
3,104,369	-		LRK54_RS13905	0.41	+0.7
3,104,369	-		LRK54_RS13905	0.41	+0.7
3,104,612	+		LRK54_RS13905	0.57	-1.0
3,104,612	+		LRK54_RS13905	0.57	+0.1
3,104,612	+		LRK54_RS13905	0.57	-0.6
3,104,612	+		LRK54_RS13905	0.57	+1.3
3,104,612	+		LRK54_RS13905	0.57	-0.0
3,104,612	+		LRK54_RS13905	0.57	-1.9
3,104,612	+		LRK54_RS13905	0.57	+0.5
3,104,612	+		LRK54_RS13905	0.57	-0.0
3,104,612	+		LRK54_RS13905	0.57	-0.5
3,104,612	+		LRK54_RS13905	0.57	-2.1
3,104,612	+		LRK54_RS13905	0.57	-1.6
3,104,612	+		LRK54_RS13905	0.57	+1.0
3,104,612	+		LRK54_RS13905	0.57	-0.2
3,104,612	+		LRK54_RS13905	0.57	-1.2
3,104,612	+		LRK54_RS13905	0.57	-0.9
3,104,612	+		LRK54_RS13905	0.57	+0.5
3,104,612	+		LRK54_RS13905	0.57	+2.0
3,104,612	+		LRK54_RS13905	0.57	-0.0
3,104,612	+		LRK54_RS13905	0.57	-0.3
3,104,612	+		LRK54_RS13905	0.57	-0.5
3,104,613	-		LRK54_RS13905	0.57	+1.2
3,104,613	-		LRK54_RS13905	0.57	+0.2
3,104,613	-		LRK54_RS13905	0.57	-1.7
3,104,613	-		LRK54_RS13905	0.57	-0.2
3,104,613	-		LRK54_RS13905	0.57	+1.9
3,104,613	-		LRK54_RS13905	0.57	-2.2
3,104,613	-		LRK54_RS13905	0.57	-1.6
3,104,613	-		LRK54_RS13905	0.57	+0.3
3,104,613	-		LRK54_RS13905	0.57	-0.2
3,104,613	-		LRK54_RS13905	0.57	-0.1
3,104,613	-		LRK54_RS13905	0.57	-1.4
3,104,613	-		LRK54_RS13905	0.57	-0.1
3,104,613	-		LRK54_RS13905	0.57	-0.2
3,104,613	-		LRK54_RS13905	0.57	-0.8
3,104,706	+		LRK54_RS13905	0.64	+1.4
3,104,706	+		LRK54_RS13905	0.64	+0.1
3,104,707	-		LRK54_RS13905	0.64	+1.6
3,104,839	+		LRK54_RS13905	0.73	-0.4
3,104,839	+		LRK54_RS13905	0.73	-0.3
3,104,839	+		LRK54_RS13905	0.73	+0.3
3,104,839	+		LRK54_RS13905	0.73	-1.1
3,104,839	+		LRK54_RS13905	0.73	-0.0
3,104,840	-		LRK54_RS13905	0.73	-1.1
3,104,840	-		LRK54_RS13905	0.73	-0.8
3,105,249	+				+1.6
3,105,249	+				-1.1
3,105,249	+				-0.8
3,105,326	+				+0.2
3,105,326	+				-0.7
3,105,327	-				-0.6
3,105,327	-				-0.7
3,105,327	-				+0.5
3,105,356	+				-2.1
3,105,356	+				+0.0
3,105,356	+				-1.3
3,105,356	+				+0.5
3,105,476	+		LRK54_RS13910	0.28	-1.2
3,105,476	+		LRK54_RS13910	0.28	-1.2
3,105,707	+		LRK54_RS13910	0.73	-3.2
3,105,794	+		LRK54_RS13910	0.90	-1.5
3,105,794	+		LRK54_RS13910	0.90	-0.0
3,105,794	+		LRK54_RS13910	0.90	+1.6
3,105,794	+		LRK54_RS13910	0.90	-1.2
3,105,794	+		LRK54_RS13910	0.90	-0.1
3,105,794	+		LRK54_RS13910	0.90	-0.4
3,105,794	+		LRK54_RS13910	0.90	+1.2
3,105,794	+		LRK54_RS13910	0.90	-1.6
3,105,794	+		LRK54_RS13910	0.90	-1.3
3,105,794	+		LRK54_RS13910	0.90	+0.3
3,105,794	+		LRK54_RS13910	0.90	+0.6
3,105,795	-		LRK54_RS13910	0.90	-1.9
3,105,795	-		LRK54_RS13910	0.90	-2.5
3,105,795	-		LRK54_RS13910	0.90	+0.0
3,105,795	-		LRK54_RS13910	0.90	-1.8
3,105,795	-		LRK54_RS13910	0.90	-2.0
3,105,795	-		LRK54_RS13910	0.90	+0.9
3,105,795	-		LRK54_RS13910	0.90	+1.6
3,105,795	-		LRK54_RS13910	0.90	-2.1
3,105,795	-		LRK54_RS13910	0.90	-1.8
3,105,862	+				-1.8
3,105,862	+				-1.3
3,105,862	+				-1.4
3,105,862	+				+0.0
3,105,862	+				-1.4
3,105,862	+				+1.6
3,105,862	+				+0.3
3,105,862	+				-0.4
3,105,862	+				-0.4
3,105,863	-				-1.5
3,105,863	-				-0.7
3,105,863	-				-1.2
3,105,863	-				+1.8
3,105,963	+				-1.1
3,105,963	+				+0.9
3,105,963	+				-0.8
3,105,964	-				-1.1
3,105,964	-				-0.6
3,105,964	-				+0.6
3,105,964	-				+0.5
3,106,068	+		LRK54_RS13915	0.18	-0.6
3,106,068	+		LRK54_RS13915	0.18	-1.9
3,106,068	+		LRK54_RS13915	0.18	-0.2
3,106,068	+		LRK54_RS13915	0.18	+0.1
3,106,068	+		LRK54_RS13915	0.18	-0.6
3,106,068	+		LRK54_RS13915	0.18	+0.0
3,106,069	-		LRK54_RS13915	0.18	-0.4
3,106,069	-		LRK54_RS13915	0.18	-2.1
3,106,069	-		LRK54_RS13915	0.18	-1.8
3,106,069	-		LRK54_RS13915	0.18	-0.0
3,106,069	-		LRK54_RS13915	0.18	-0.8
3,106,069	-		LRK54_RS13915	0.18	-0.5
3,106,069	-		LRK54_RS13915	0.18	-0.7
3,106,069	-		LRK54_RS13915	0.18	+1.0
3,106,069	-		LRK54_RS13915	0.18	+0.0
3,106,069	-		LRK54_RS13915	0.18	-1.6
3,106,069	-		LRK54_RS13915	0.18	+0.6
3,106,069	-		LRK54_RS13915	0.18	-0.4
3,106,069	-		LRK54_RS13915	0.18	-1.5
3,106,069	-		LRK54_RS13915	0.18	-1.3
3,106,069	-		LRK54_RS13915	0.18	-1.6
3,106,069	-		LRK54_RS13915	0.18	-2.2
3,106,069	-		LRK54_RS13915	0.18	-1.2
3,106,074	+		LRK54_RS13915	0.19	-0.6
3,106,074	+		LRK54_RS13915	0.19	+0.9
3,106,074	+		LRK54_RS13915	0.19	-0.3
3,106,074	+		LRK54_RS13915	0.19	+0.3
3,106,074	+		LRK54_RS13915	0.19	+2.6
3,106,074	+		LRK54_RS13915	0.19	-0.5
3,106,074	+		LRK54_RS13915	0.19	-0.5
3,106,074	+		LRK54_RS13915	0.19	-1.2
3,106,074	+		LRK54_RS13915	0.19	+1.0
3,106,074	+		LRK54_RS13915	0.19	-0.2
3,106,074	+		LRK54_RS13915	0.19	-1.7
3,106,074	+		LRK54_RS13915	0.19	-0.8
3,106,074	+		LRK54_RS13915	0.19	-0.5
3,106,074	+		LRK54_RS13915	0.19	-0.0
3,106,074	+		LRK54_RS13915	0.19	-0.4
3,106,074	+		LRK54_RS13915	0.19	-2.0
3,106,074	+		LRK54_RS13915	0.19	+2.9
3,106,074	+		LRK54_RS13915	0.19	-1.5
3,106,074	+		LRK54_RS13915	0.19	-1.9
3,106,075	-		LRK54_RS13915	0.19	+0.2
3,106,075	-		LRK54_RS13915	0.19	-1.8
3,106,075	-		LRK54_RS13915	0.19	+1.6
3,106,075	-		LRK54_RS13915	0.19	+0.3
3,106,075	-		LRK54_RS13915	0.19	-1.0
3,106,075	-		LRK54_RS13915	0.19	-1.8
3,106,075	-		LRK54_RS13915	0.19	+1.0
3,106,075	-		LRK54_RS13915	0.19	-1.2
3,106,075	-		LRK54_RS13915	0.19	-0.6
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	+0.3
3,106,075	-		LRK54_RS13915	0.19	-1.6
3,106,075	-		LRK54_RS13915	0.19	-0.1
3,106,075	-		LRK54_RS13915	0.19	+0.4
3,106,075	-		LRK54_RS13915	0.19	-0.8
3,106,075	-		LRK54_RS13915	0.19	+0.0
3,106,075	-		LRK54_RS13915	0.19	-1.6
3,106,075	-		LRK54_RS13915	0.19	+0.8
3,106,075	-		LRK54_RS13915	0.19	+0.6
3,106,075	-		LRK54_RS13915	0.19	-0.4
3,106,075	-		LRK54_RS13915	0.19	-0.6
3,106,075	-		LRK54_RS13915	0.19	-0.6
3,106,075	-		LRK54_RS13915	0.19	-1.1
3,106,075	-		LRK54_RS13915	0.19	-2.1
3,106,075	-		LRK54_RS13915	0.19	-1.1
3,106,075	-		LRK54_RS13915	0.19	-2.3